Figures (5)  Tables (2)
    • Figure 1.  Phenotypic characterizations of MIR319a over-expression transgenic polar lines. (a) Leaves from MIR319a over-expression transgenic lines and WT. The 2nd, 4th, 6th, 8th, and 10th represent the second, fourth, sixth, eighth and tenth leaves counted from the apical bud of MIR319a over-expression transgenic poplar plants, respectively. (b) The expression levels of miR319a in WT and 14 transgenic lines measured by qRT-PCR with three technical replicates.

    • Figure 2.  The vascular bundle and bundle sheath cells on microscopic leaf cross sections stained with phloroglucinol HCl in MIR319a over-expression transgenic lines and WT. The leaves were from the second, sixth and tenth stem nodes, respectively. The photos were taken at 10X, 40X and 100X. Bars in a−f: 200 μm, g−l: 50 μm, m−r: 20 μm. x, p and bs represent xylem, phloem and bundle sheath, respectively.

    • Figure 3.  Phylogenetic tree constructed with the protein sequences of 93 putative target genes of miR319a in Populus trichocarpa, 5 from Arabidopsis and 2 from rice. A neighbor-joining (NJ) method in MEGA7.0 was used to generate the tree. The tree consists of 3 distinct clades. The proteins whose genes were differentially expressed genes (DEGs) are highlighted in red.

    • Figure 4.  Expression levels of MEE35/TCP4, TCP2 and TCP2-1 determined by qRT-PCR in MIR319a over-expression transgenic leaves and WT.

    • Figure 5.  Three-layered hierarchical gene regulatory network under the control of miR319a in the leaves of P. alba × P. glandulosa. The green circle represents the leaf development gene, blue circles represent phloem or xylem histogenesis genes, the purple circle represents the phyllome development gene, gray circles represent xylem development genes, the red circle represents the lignin biosynthesis gene, and yellow circles represent photosynthesis genes. The gene IDs are provided in Supplemental Table 5.

    • GO_Term GO ID p-value Average FC*
      Chlorophyll biosynthetic process GO:0015995 0.000195 −1.6598
      chlorophyll metabolic process GO:0015994 0.000548 −1.1459
      Photosynthetic electron transport in photosystem I GO:0009773 5.77E-08 −1.3109
      Photosynthetic electron transport in photosystem II GO:0009772 0.000129 −1.4662
      Electron transport chain GO:0022900 9.89E-08 1.2090
      Leaf development GO:0048366 0.006600 1.1968
      Phyllome development GO:0048827 0.001743 −1.4103
      Meristem development GO:0048507 0.000969 1.6703
      Meristem maintenance GO:0010073 0.002897 1.4769
      Regulation of meristem development GO:0048509 0.001992 1.419
      Phloem or xylem histogenesis GO:0010087 0.000156 1.1578
      Xylem development GO:0010089 0.012376 2.0586
      Lignin catabolic process GO:0046274 0.015023 −3.0332
      Lignin metabolic process GO:0009808 0.000747 2.1952
      Auxin metabolic process GO:0009850 0.000685 1.6071
      Tryptophan catabolic process GO:0006569 0.009640 3.3018
      Gibberellin metabolic process GO:0009685 0.003229 4.7556
      Gibberellin biosynthetic process GO:0009686 0.015585 1.5146
      *FC represents an average expression fold change of all DEGs that are involved in a biological process represented by a gene ontology.

      Table 1.  Gene ontology enrichment analysis of differentially expressed genes (DEGs) in MIR319a over-expression transgenics.

    • Domain Description No. of DEGs EnrichScore Average FC*
      IPR008543 Chloroplast Ycf2 2 0.000295 −3.8012
      IPR001344 Chlorophyll A-B binding protein 17 2.27E-16 1.0013
      IPR002628 Photosystem II manganese-stabilizing protein PsbO 1 0.005071 1.0415
      IPR003375 Photosystem I reaction centre subunit IV/PsaE 2 2.64E-06 1.0408
      IPR003685 Photosystem I protein PsaD 2 1.05E-05 1.0476
      IPR009806 Photosystem II protein PsbW, class 2 2 2.59E-05 −1.028
      IPR001056 Photosystem II phosphoprotein PsbH 3 1.23E-06 −2.2731
      IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase 1 0.0001913 −1.0524
      IPR005150 Cellulose synthase 9 1.38E-06 1.5418
      IPR001246 Lipoxygenase, plant 3 0.000962 1.1511
      *FC represents average expression fold changes of all DEGs whose protein sequences have a specific protein domain.

      Table 2.  Protein domains that were enriched in DEGs in MIR319a over-expression transgenics.