| [1] |
Palmer JD, Herbon LA. 1988. Plant mitochondrial DNA evolved rapidly in structure, but slowly in sequence. |
| [2] |
Wolfe KH, Li WH, Sharp PM. 1987. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. |
| [3] |
Smith DR, Keeling PJ. 2015. Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes. |
| [4] |
Mower JP, Touzet P, Gummow JS, Delph LF, Palmer JD. 2007. Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants. |
| [5] |
Sloan DB, Oxelman B, Rautenberg A, Taylor DR. 2009. Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae. |
| [6] |
Zhu A, Guo W, Jain K, Mower JP. 2014. Unprecedented heterogeneity in the synonymous substitution rate within a plant genome. |
| [7] |
Wang J, Kan S, Liao X, Zhou J, Tembrock LR, et al. 2024. Plant organellar genomes: Much done, much more to do. |
| [8] |
Cho Y, Mower JP, Qiu YL, Palmer JD. 2004. Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants. |
| [9] |
Lynch M, Koskella B, Schaack S. 2006. Mutation pressure and the evolution of organelle genomic architecture. |
| [10] |
Smith DR. 2016. The mutational hazard hypothesis of organelle genome evolution: 10 years on. |
| [11] |
Zwonitzer KD, Tressel LG, Wu Z, Kan S, Broz AK, et al. 2024. Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. |
| [12] |
Sloan DB, Alverson AJ, Chuckalovcak JP, Wu M, McCauley DE, et al. 2012. Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. |
| [13] |
Christensen AC. 2013. Plant mitochondrial genome evolution can be explained by DNA repair mechanisms. |
| [14] |
Christensen AC. 2014. Genes and junk in plant mitochondria—repair mechanisms and selection. |
| [15] |
Butenko A, Lukeš J, Speijer D, Wideman JG. 2024. Mitochondrial genomes revisited: Why do different lineages retain different genes? |
| [16] |
Wang J, He W, Liao X, Ma J, Gao W, et al. 2023. Phylogeny, molecular evolution, and dating of divergences in Lagerstroemia using plastome sequences. |
| [17] |
Preuten T, Cincu E, Fuchs J, Zoschke R, Liere K, et al. 2010. Fewer genes than organelles: Extremely low and variable gene copy numbers in mitochondria of somatic plant cells. |
| [18] |
Zhang L, Ma J, Shen Z, Wang B, Jiang Q, et al. 2023. Low copy numbers for mitochondrial DNA moderates the strength of nuclear–cytoplasmic incompatibility in plants. |
| [19] |
Shen J, Zhang Y, Havey MJ, Shou W. 2019. Copy numbers of mitochondrial genes change during melon leaf development and are lower than the numbers of mitochondria. |
| [20] |
Krämer C, Boehm CR, Liu J, Ting MKY, Hertle AP, et al. 2024. Removal of the large inverted repeat from the plastid genome reveals gene dosage effects and leads to increased genome copy number. |
| [21] |
Gandini CL, Garcia LE, Abbona CC, Ceriotti LF, Kushnir S, et al. 2023. Break-induced replication is the primary recombination pathway in plant somatic hybrid mitochondria: A model for mitochondrial horizontal gene transfer. |
| [22] |
Gualberto JM, Newton KJ. 2017. Plant mitochondrial genomes: Dynamics and mechanisms of mutation. |
| [23] |
Fan W, Liu F, Jia Q, Du H, Chen W, et al. 2022. Fragaria mitogenomes evolve rapidly in structure but slowly in sequence and incur frequent multinucleotide mutations mediated by microinversions. |
| [24] |
Wu Z, Waneka G, Sloan DB. 2020. The tempo and mode of angiosperm mitochondrial genome divergence inferred from intraspecific variation in Arabidopsis thaliana. |
| [25] |
Xiang QP, Tang JY, Yu JG, Smith DR, Zhu YM, et al. 2022. The evolution of extremely diverged plastomes in Selaginellaceae (lycophyte) is driven by repeat patterns and the underlying DNA maintenance machinery. |
| [26] |
Lee Y, Cho CH, Noh C, Yang JH, Park SI, et al. 2023. Origin of minicircular mitochondrial genomes in red algae. |
| [27] |
Wu Z, Waneka G, Broz AK, King CR, Sloan DB. 2020. MSH1 is required for maintenance of the low mutation rates in plant mitochondrial and plastid genomes. |
| [28] |
Odahara M, Sekine Y. 2018. RECX interacts with mitochondrial RECA to maintain mitochondrial genome stability. |
| [29] |
Lynch M. 2010. Evolution of the mutation rate. |
| [30] |
Broz AK, Keene A, Fernandes Gyorfy M, Hodous M, Johnston IG, et al. 2022. Sorting of mitochondrial and plastid heteroplasmy in Arabidopsis is extremely rapid and depends on MSH1 activity. |
| [31] |
Khachaturyan M, Santer M, Reusch TBH, Dagan T. 2024. Heteroplasmy is rare in plant mitochondria compared with plastids despite similar mutation rates. |
| [32] |
Broz AK, Sloan DB, Johnston IG. 2024. Stochastic organelle genome segregation through Arabidopsis development and reproduction. |
| [33] |
Postel Z, Sloan DB, Gallina S, Godé C, Schmitt E, et al. 2023. The decoupled evolution of the organellar genomes of Silene nutans leads to distinct roles in the speciation process. |