| [1] |
Silva S, Costa EM, Veiga M, Morais RM, Calhau C, et al. 2020. Health promoting properties of blueberries: a review. |
| [2] |
Dróżdż P, Šėžienė V, Pyrzynska K. 2017. Phytochemical properties and antioxidant activities of extracts from wild blueberries and lingonberries. |
| [3] |
Wang J, Zhao X, Zheng J, Herrera-Balandrano DD, Zhang X, et al. 2023. In vivo antioxidant activity of rabbiteye blueberry (Vaccinium ashei cv. 'Brightwell') anthocyanin extracts. |
| [4] |
Faria A, Pestana D, Teixeira D, Mateus N, Calhau C, et al. 2010. Blueberry anthocyanins and pyruvic acid adducts: anticancer properties in breast cancer cell lines. |
| [5] |
Bensalem J, Dudonné S, Gaudout D, Servant L, Calon F, et al. 2018. Polyphenol-rich extract from grape and blueberry attenuates cognitive decline and improves neuronal function in aged mice. |
| [6] |
Kalt W, Cassidy A, Howard LR, Krikorian R, Stull AJ, et al. 2020. Recent research on the health benefits of blueberries and their anthocyanins. |
| [7] |
Cappai F, Benevenuto J, Ferrão LFV, Munoz P. 2018. Molecular and genetic bases of fruit firmness variation in blueberry—a review. |
| [8] |
Montecchiarini ML, Silva-Sanzana C, Valderramo L, Alemano S, Gollán A, et al. 2021. Biochemical differences in the skin of two blueberries (Vaccinium corymbosum) varieties with contrasting firmness: implication of ions, metabolites and cell wall related proteins in two developmental stages. |
| [9] |
Uluisik S, Chapman NH, Smith R, Poole M, Adams G, et al. 2016. Genetic improvement of tomato by targeted control of fruit softening. |
| [10] |
Wang D, Yeats TH, Uluisik S, Rose JKC, Seymour GB. 2018. Fruit softening: revisiting the role of pectin. |
| [11] |
Eticha D, Stass A, Horst W J. 2005. Cell-wall pectin and its degree of methylation in the maize root‐apex: significance for genotypic differences in aluminium resistance. |
| [12] |
Guillon F, Moïse A, Quemener B, Bouchet B, Devaux MF, et al. 2017. Remodeling of pectin and hemicelluloses in tomato pericarp during fruit growth. |
| [13] |
Zhou HL, Li JR. 2007. The relationship between fruit structure with pressure and pulling force of berry of grapes. |
| [14] |
Wang M, Zhao Z, Tang W, Chen Z, Xi X, et al. 2013. Expression and purification of LBD family transcription factors TtRa2 and AtLBD37. Journal of Northwest A&F University (Natural Science Edition) 41(11):174−78 |
| [15] |
Chen WF, Wei XB, Rety S, Huang LY, Liu NN, et al. 2019. Structural analysis reveals a "molecular calipers" mechanism for a lateral organ boundaries domain transcription factor protein from wheat. |
| [16] |
Lee HW, Kim MJ, Park MY, Han KH, Kim J. 2013. The conserved praline residue in the LOB domain of LBDl8 is critical for DNA-binding and biological function. |
| [17] |
Husbands A, Bell EM, Shuai B, Smith HM, Springer PS. 2007. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins. |
| [18] |
Iwakawa H, Ueno Y, Semiarti E, Onouchi H, Kojima S, et al. 2002. The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. |
| [19] |
Shuai B, Reynaga-Peña CG, Springer PS. 2002. The lateral organ boundaries gene defines a novel, plant-specific gene family. |
| [20] |
Wang XF, Liu X, Su L, Sun YJ, Zhang SZ, et al. 2013. Identification, evolution and expression analysis of the LBD gene family in tomato. |
| [21] |
Gupta K, Gupta S. 2021. Molecular and in silico characterization of tomato LBD transcription factors reveals their role in fruit development and stress responses. |
| [22] |
Shi Y. 2017. Regulation of tomato fruit softening by LOB1 and other transcription factors. Thesis. Zhejiang University, China. pp. 54−71 |
| [23] |
Chen Q, Zhou MK, Song JM, Zhang C, Wu LK. 2023. Identification and analysis of LBD gene family and expression analysis of fruit development in Cucumis melo. |
| [24] |
Ba LJ, Shan W, Kuang JF, Feng BH, Xiao YY, et al. 2014. The banana MaLBD (LATERAL ORGAN BOUNDARIES DOMAIN) transcription factors regulate EXPANSIN expression and are involved in fruit ripening. |
| [25] |
Zifkin M, Jin A, Ozga JA, Zaharia LI, Schernthaner JP, et al. 2012. Gene expression and metabolite profiling of developing highbush blueberry fruit indicates transcriptional regulation of flavonoid metabolism and activation of abscisic acid metabolism. |
| [26] |
Kim D, Paggi JM, Park C, Bennett C, Salzberg SL. 2019. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. |
| [27] |
Shumate A, Wong B, Pertea G, Pertea M. 2022. Improved transcriptome assembly using a hybrid of long and short reads with StringTie. |
| [28] |
Colle M, Leisner CP, Wai CM, Ou SJ, Bird KA, et al. 2019. Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry. |
| [29] |
Benjamini Y, Yekutieli D. 2001. The control of the false discovery rate in multiple testing under dependency. |
| [30] |
Li B, Dewey CN. 2011. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. |
| [31] |
Tamura K, Stecher G, Kumar S. 2021. MEGA11: molecular evolutionary genetics analysis version 11. |
| [32] |
Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, et al. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. |
| [33] |
Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, et al. 2020. TBtools: an integrative toolkit developed for interactive analyses of big biological data. |
| [34] |
Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, et al. 2012. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. |
| [35] |
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, et al. 2009. Circos: an information aesthetic for comparative genomics. |
| [36] |
Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCᴛ method. |
| [37] |
Shen ZL, Gu LL, Li XY, Li YQ, Zong Y, et al. 2023. Foundation and optimization of protocol for blueberry fruit firmness measurement under mix mode of deflection distance and pressure weight. |
| [38] |
Chen H, Cao S, Fang X, Mu H, Yang H, et al. 2015. Changes in fruit firmness, cell wall composition and cell wall degrading enzymes in postharvest blueberries during storage. |
| [39] |
Kozioł A, Cybulska J, Pieczywek PM, Zdunek A. 2017. Changes of pectin nanostructure and cell wall stiffness induced in vitro by pectinase. |
| [40] |
Blumenkrantz N, Asboe-Hansen G. 1973. New method for quantitative determination of uronic acids. |
| [41] |
Yang Y, Yu X, Wu P. 2006. Comparison and evolution analysis of two rice subspecies LATERAL ORGAN BOUNDARIES domain gene family and their evolutionary characterization from Arabidopsis. |
| [42] |
Wang R, Bai T, Gao H, Cui Y, Zhou R, et al. 2023. Genome-wide identification of LBD transcription factors in apple and the function of MdLBD16a in adventitious rooting and callus development. |
| [43] |
Zhu QH, Guo AY, Gao G, Zhong YF, Xu M, et al. 2007. DPTF: a database of poplar transcription factors. |
| [44] |
Yang F, Nie S, Liu H, Shi T, Tian X, et al. 2020. Chromosome-level genome assembly of a parent species of widely cultivated azaleas. |
| [45] |
Majer C, Hochholdinger F. 2011. Defining the boundaries: structure and function of LOB domain proteins. |
| [46] |
Semiarti E, Ueno Y, Tsukaya H, Iwakawa H, Machida C, et al. 2001. The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana regulates formation of a symmetric lamina, establishment of venation and repression of meristem-related homeobox genes in leaves. |
| [47] |
Li HH, Liu X, An JP, Hao YJ, Wang XF, et al. 2017. Cloning and elucidation of the functional role of apple MdLBD13 in anthocyanin biosynthesis and nitrate assimilation. |
| [48] |
Liu L, Zhang J, Xu J, Li Y, Guo L, et al. 2020. CRISPR/Cas9 targeted mutagenesis of SlLBD40, a lateral organ boundaries domain transcription factor, enhances drought tolerance in tomato. |
| [49] |
Rubin G, Tohge T, Matsuda F, Saito K, Scheible WR. 2009. Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. |
| [50] |
Hadfield KA, Bennett AB. 1998. Polygalacturonases: many genes in search of a function. |
| [51] |
Huber DJ, O'Donoghue EM. 1993. Polyuronides in avocado (Persea americana) and tomato (Lycopersicon esculentum) fruits exhibit markedly different patterns of molecular weight downshifts during ripening. |
| [52] |
Posé S, Paniagua C, Cifuentes M, Blanco-Portales R, Quesada MA, et al. 2013. Insights into the effects of polygalacturonase FaPG1 gene silencing on pectin matrix disassembly, enhanced tissue integrity, and firmness in ripe strawberry fruits. |
| [53] |
Song L. 2016. Changes in cell wall substances metabolism during ripening of 'Starkrimson' pear fruits and screening analyses of the related genes. Thesis. Northwest A&F University, China. pp. 23−47 |
| [54] |
Hu Y, Zhang J, Jia H, Sosso D, Li T, et al. 2014. Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease. |
| [55] |
Shi Y, Vrebalov J, Zheng H, Xu Y, Yin X, et al. 2021. A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening. |
| [56] |
Liu J, Sheng L, Xu Y, Li J, Yang Z, et al. 2014. WOX11 and 12 are involved in the first-step cell fate transition during de novo root organogenesis in Arabidopsis. |
| [57] |
Sun Y, Fan XY, Cao DM, Tang W, He K, et al. 2010. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. |
| [58] |
Thatcher LF, Powell JJ, Aitken EA, Kazan K, Manners JM. 2012. The lateral organ boundaries domain transcription factor LBD20 functions in Fusarium wilt Susceptibility and jasmonate signaling in Arabidopsis. |