| [1] |
Song S, Tang C, Cheng H, Shu K. 2024. Research progress in regulation of seed germination. |
| [2] |
Xu F, Tang J, Wang S, Cheng X, Wang H, et al. 2022. Antagonistic control of seed dormancy in rice by two bHLH transcription factors. |
| [3] |
Bewley J, Bradford K, Hilhorst H, Konogaki H. 2013. Seed: physiology of development, germination and dormancy, 3rd edition. New York: Springer. xiii, 392 pp doi: 10.1007/978-1-4614-4693-4 |
| [4] |
Sohn SI, Pandian S, Kumar TS, Zoclanclounon YAB, Muthuramalingam P, et al. 2021. Seed dormancy and pre-harvest sprouting in rice—an updated overview. |
| [5] |
Zhao J, He Y, Zhang H, Wang Z. 2024. Advances in the molecular regulation of seed germination in plants. |
| [6] |
Nonogaki H. 2019. Seed germination and dormancy: the classic story, new puzzles, and evolution. |
| [7] |
Zubo YO, Schaller GE. 2020. Role of the cytokinin-activated type-B response regulators in hormone crosstalk. |
| [8] |
Song S, Liu J, Xu H, Liu X, Huang H. 2020. ABA metabolism and signaling and their molecular mechanism regulating seed dormancy and germination. |
| [9] |
Ito T, Okada K, Fukazawa J, Takahashi Y. 2018. DELLA-dependent and -independent gibberellin signaling. |
| [10] |
North HM, De Almeida A, Boutin JP, Frey A, To A, et al. 2007. The Arabidopsis ABA-deficient mutant aba4 demonstrates that the major route for stress-induced ABA accumulation is via neoxanthin isomers. |
| [11] |
Yuan Z, Fan K, Wang Y, Tian L, Zhang C, et al. 2021. OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances. |
| [12] |
Saito S, Hirai N, Matsumoto C, Ohigashi H, Ohta D, et al. 2004. Arabidopsis CYP707As encode (+)-abscisic acid 8'-hydroxylase, a key enzyme in the oxidative catabolism of abscisic acid. |
| [13] |
Dejonghe W, Okamoto M, and Cutler SR. 2018. Small molecule probes of ABA biosynthesis and signaling. |
| [14] |
Soon FF, Ng LM, Zhou XE, West GM, Kovach A, et al. 2012. Molecular mimicry regulates ABA signaling by SnRK2 kinases and PP2C phosphatases. |
| [15] |
Yu J, Mao C, Zhong Q, Yao X, Li P, et al. 2021. OsNAC2 is involved in multiple hormonal pathways to mediate germination of rice seeds and establishment of seedling. |
| [16] |
Chen Y, Xiang Z, Liu M, Wang S, Zhang L, et al. 2023. ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice. |
| [17] |
Sun L, Li J, Liu Y, Noman A, Chen L, et al. 2022. Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens. |
| [18] |
Bhatnagar N, Min MK, Choi EH, Kim N, Moon SJ, et al. 2017. The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10. |
| [19] |
Wang Q, Lin Q, Wu T, Duan E, Huang Y, et al. 2020. OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice. |
| [20] |
Lou D, Wang H, Liang G, and Yu D. 2017. OsSAPK2 confers abscisic acid sensitivity and tolerance to drought stress in rice. |
| [21] |
Song S, Dai X, Zhang WH. 2012. A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice. |
| [22] |
Xie W, Li X, Wang S, and Yuan, M. 2021. OsWRKY53 promotes abscisic acid accumulation to accelerate leaf senescence and inhibit seed germination by downregulating abscisic acid catabolic genes in rice. |
| [23] |
Huang S, Hu L, Zhang S, Zhang M, Jiang W, et al. 2021. Rice OsWRKY50 mediates ABA-dependent seed germination and seedling growth, and ABA-independent salt stress tolerance. |
| [24] |
Wang R, Yang X, Guo S, Wang Z, Zhang Z, et al. 2021. MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice. |
| [25] |
Wang G, Li X, Ye N, Huang M, Feng L, et al. 2021. OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice. |
| [26] |
Zhao B, Zhang H, Chen T, Ding L, Zhang L, et al. 2022. Sdr4 dominates pre-harvest sprouting and facilitates adaptation to local climatic condition in Asian cultivated rice. |
| [27] |
Qin P, Zhang G, Hu B, Wu J, Chen W, et al. 2021. Leaf-derived ABA regulates rice seed development via a transporter-mediated and temperature-sensitive mechanism. |
| [28] |
Li Y, Zhou J, Li Z, Qiao J, Quan R, et al. 2022. SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice. |
| [29] |
Wang M, Li W, Fang C, Xu F, Liu Y, et al. 2018. Parallel selection on a dormancy gene during domestication of crops from multiple families. |
| [30] |
Zhang S, Zhu L, Shen C, Ji Z, Zhang H, et al. 2021. Natural allelic variation in a modulator of auxin homeostasis improves grain yield and nitrogen use efficiency in rice. |
| [31] |
Miao C, Xiao L, Hua K, Zou C, Zhao Y, et al. 2018. Mutations in a subfamily of abscisic acid receptor genes promote rice growth and productivity. |
| [32] |
Li C, Shen H, Wang T, Wang X. 2015. ABA regulates subcellular redistribution of OsABI-LIKE2, a negative regulator in ABA signaling, to control root architecture and drought resistance in Oryza sativa. |
| [33] |
Yoshida H, Hirano K, Yano K, Wang F, Mori M, et al. 2022. Genome-wide association study identifies a gene responsible for temperature-dependent rice germination. |
| [34] |
Zhang C, Wang H, Tian X, Lin X, Han Y, et al. 2024. A transposon insertion in the promoter of OsUBC12 enhances cold tolerance during japonica rice germination. |
| [35] |
Hossain MA, Cho JI, Han M, Ahn CH, Jeon JS, et al. 2010. The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice. |
| [36] |
Du L, Xu F, Fang J, Gao S, Tang J, et al. 2018. Endosperm sugar accumulation caused by mutation of PHS8/ISA1 leads to pre-harvest sprouting in rice. |
| [37] |
Guo N, Tang S, Wang Y, Chen W, An R, et al. 2024. A mediator of OsbZIP46 deactivation and degradation negatively regulates seed dormancy in rice. |
| [38] |
Zong W, Tang N, Yang J, Peng L, Ma S, et al. 2016. Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought-resistance-related genes. |
| [39] |
Fan X, Gao F, Liu Y, Huang W, Yang Y, et al. 2025. The transcription factor CCT30 promotes rice preharvest sprouting by regulating sugar signalling to inhibit the ABA-mediated pathway. |
| [40] |
Wang J, Deng Q, Li Y, Yu Y, Liu X, et al. 2020. Transcription factors Rc and OsVP1 coordinately regulate preharvest sprouting tolerance in red pericarp rice. |
| [41] |
Chen W, Wang W, Lyu Y, Wu Y, Huang P, et al. 2021. OsVP1 activates Sdr4 expression to control rice seed dormancy via the ABA signaling pathway. |
| [42] |
Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, et al. 2010. Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. |
| [43] |
Park GG, Park JJ, Yoon J, Yu SN, An G. 2010. A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice. |
| [44] |
Li C, Zheng L, Wang X, Hu Z, Zheng Y, et al. 2019. Comprehensive expression analysis of Arabidopsis GA2-oxidase genes and their functional insights. |
| [45] |
Dill A, Jung HS, Sun TP. 2001. The DELLA motif is essential for gibberellin-induced degradation of RGA. |
| [46] |
Lo SF, Yang SY, Chen KT, Hsing YI, Zeevaart JAD, et al. 2008. A novel class of gibberellin 2-oxidases control semidwarfism, tillering, and root development in rice. |
| [47] |
Xing MQ, Chen SH, Zhang XF, Xue HW. 2023. Rice OsGA2ox9 regulates seed GA metabolism and dormancy. |
| [48] |
Duan M, Ke XJ, Lan HX, Yuan X, Huang P, et al. 2021. A Cys2/His2 zinc finger protein acts as a repressor of the green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.). |
| [49] |
Carrera-Castaño G, Calleja-Cabrera J, Pernas M, Gómez L, and Oñate-Sánchez L. 2020. An updated overview on the regulation of seed germination. |
| [50] |
Sajeev N, Koornneef M, and Bentsink L. 2024. A commitment for life: decades of unraveling the molecular mechanisms behind seed dormancy and germination. |
| [51] |
He Y, Zhu M, Li Z, Jiang S, He Z, et al. 2021. IPA1 negatively regulates early rice seedling development by interfering with starch metabolism via the GA and WRKY pathways. |
| [52] |
Miao C, Wang Z, Zhang L, Yao J, Hua K, et al. 2019. The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice. |
| [53] |
Su S, Hong J, Chen X, Zhang C, Chen M, et al. 2021. Gibberellins orchestrate panicle architecture mediated by DELLA–KNOX signalling in rice. |
| [54] |
Wang H, Hou Y, Wang S, Tong X, Tang L, et al. 2021. WRKY72 negatively regulates seed germination through interfering gibberellin pathway in rice. |
| [55] |
Ye H, Feng J, Zhang L, Zhang J, Mispan MS, et al. 2015. Map-based cloning of seed dormancy1-2 identified a gibberellin synthesis gene regulating the development of endosperm-imposed dormancy in rice. |
| [56] |
Wu J, Zhu C, Pang J, Zhang X, Yang C, et al. 2014. OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. |
| [57] |
Zhang H, Li M, He D, Wang K, Yang P. 2020. Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice. |
| [58] |
Huang X, Lu Z, Wang X, Ouyang Y, Chen W, et al. 2016. Imprinted gene OsFIE1 modulates rice seed development by influencing nutrient metabolism and modifying genome H3K27me3. |
| [59] |
Cho SH, Kang K, Lee SH, Lee IJ, Paek NC. 2016. OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa). |
| [60] |
Liu X, Li Z, Hou Y, Wang Y, Wang H, et al. 2019. Protein interactomic analysis of SAPKs and ABA-Inducible bZIPs revealed key roles of SAPK10 in rice flowering. |
| [61] |
Tang L, Xu H, Wang Y, Wang H, Li Z, et al. 2021. OsABF1 represses gibberellin biosynthesis to regulate plant height and seed germination in rice (Oryza sativa L). |
| [62] |
Lin Q, Zhang Z, Wu F, Feng M, Sun Y, et al. 2020. The APC/CTE E3 ubiquitin ligase complex mediates the antagonistic regulation of root growth and tillering by ABA and GA. |
| [63] |
Shu K, Zhou W, Yang W. 2018. APETALA 2-domain-containing transcription factors: focusing on abscisic acid and gibberellins antagonism. |
| [64] |
Zeng W, Li J, Li D, Lu J, Pan Y, et al. 2025. Interaction between OsLEC1 and OsHDA710 positively regulates callus formation in rice. |
| [65] |
Sun J, Zhang G, Cui Z, Kong X, Yu X, et al. 2022. Regain flood adaptation in rice through a 14-3-3 protein OsGF14h. |
| [66] |
Hu Y, Han X, Yang M, Zhang M, Pan J, et al. 2019. The transcription factor INDUCER OF CBF EXPRESSION1 interacts with ABSCISIC ACID INSENSITIVE5 and DELLA proteins to fine-tune abscisic acid signaling during seed germination in Arabidopsis. |
| [67] |
Yaish MW, El-Kereamy A, Zhu T, Beatty PH, Good AG, et al. 2010. The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. |
| [68] |
Thao NP, Khan MIR, Thu NBA, Hoang XLT, Asgher M, et al. 2015. Role of ethylene and its cross talk with other signaling molecules in plant responses to heavy metal stress. |
| [69] |
Yang C, Lu X, Ma B, Chen SY, Zhang JS. 2015. Ethylene signaling in rice and Arabidopsis: conserved and diverged aspects. |
| [70] |
Huang YH, Han JQ, Ma B, Cao WQ, Li XK, et al. 2023. A translational regulator MHZ9 modulates ethylene signaling in rice. |
| [71] |
Qiao J, Quan R, Wang J, Li Y, Xiao D, et al. 2024. OsEIL1 and OsEIL2, two master regulators of rice ethylene signaling, promote the expression of ROS scavenging genes to facilitate coleoptile elongation and seedling emergence from soil. |
| [72] |
Song SQ, Liu J, Xu HH, Zhang Q, Huang H, et al. 2019. Biosynthesis and signaling of ethylene and their regulation on seed germination and dormancy. |
| [73] |
Jia J, Luo Y, Wu Z, Ji Y, Liu S, et al. 2024. OsJMJ718, a histone demethylase gene, positively regulates seed germination in rice. |
| [74] |
Liu J, Song S. 2024. Seed biology. Beijing: Science Press |
| [75] |
Song S, Liu J, Yang H, Zhang W, Zhang Q, et al. 2021. Research progress in cytokinin regulating seed development, dormancy and germination regulated by cytokinin. |
| [76] |
Leyser O. 2018. Auxin signaling. |
| [77] |
Mano Y, Nemoto K. 2012. The pathway of auxin biosynthesis in plants. |
| [78] |
Casanova-Sáez R, Mateo-Bonmatí E, Ljung K. 2021. Auxin metabolism in plants. |
| [79] |
Nagpal P, Walker LM, Young JC, Sonawala A, Timpte C, et al. 2000. AXR2 encodes a member of the Aux/IAA protein family. |
| [80] |
Gomes GLB, Scortecci KC. 2021. Auxin and its role in plant development: structure, signalling, regulation and response mechanisms. |
| [81] |
Yu Z, Zhang F, Friml J, Ding Z. 2022. Auxin signaling: research advances over the past 30 years. |
| [82] |
Hussain S, Nanda S, Zhang J, Rehmani MIA, Suleman M, et al. 2021. Auxin and cytokinin interplay during leaf morphogenesis and phyllotaxy. |
| [83] |
Kurepa J, Smalle JA. 2022. Auxin/cytokinin antagonistic control of the shoot/root growth ratio and its relevance for adaptation to drought and nutrient deficiency stresses. |
| [84] |
He J, Duan Y, Hua D, Fan G, Wang L, et al. 2012. DEXH box RNA helicase–mediated mitochondrial reactive oxygen species production in Arabidopsis mediates crosstalk between abscisic acid and auxin signaling. |
| [85] |
Choi HS, Seo M, Cho HT. 2018. Two TPL-binding motifs of ARF2 are involved in repression of auxin responses. |
| [86] |
Flores-Sandoval E, Eklund DM, Hong SF, Alvarez JP, Fisher TJ, et al. 2018. Class C ARFs evolved before the origin of land plants and antagonize differentiation and developmental transitions in Marchantia polymorpha. |
| [87] |
Li Y, Han S, and Qi Y. 2023. Advances in structure and function of auxin response factor in plants. |
| [88] |
He Y, Zhao J, Yang B, Sun S, Peng L, et al. 2020. Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigour through mediating crosstalk between auxin and abscisic acid in rice. |
| [89] |
Umezawa T, Sugiyama N, Takahashi F, Anderson JC, Ishihama Y, et al. 2013. Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana. |
| [90] |
Nguyen HN, Perry L, Kisiala A, Olechowski H, Neil Emery RJ. 2020. Cytokinin activity during early kernel development corresponds positively with yield potential and later stage ABA accumulation in field-grown wheat (Triticum aestivum L.). |
| [91] |
Chitnis VR, Gao F, Yao Z, Jordan MC, Park S, et al. 2014. After-ripening induced transcriptional changes of hormonal genes in wheat seeds: the cases of brassinosteroids, ethylene, cytokinin and salicylic acid. |
| [92] |
Frébort I, Kowalska M, Hluska T, Frébortová J, Galuszka P. 2011. Evolution of cytokinin biosynthesis and degradation. |
| [93] |
Sakakibara H. 2006. Cytokinins: activity, biosynthesis, and translocation. |
| [94] |
Kieber JJ, Schaller GE. 2018. Cytokinin signaling in plant development. |
| [95] |
Zhao J, Wang J, Liu J, Zhang P, Kudoyarova G, et al. 2024. Spatially distributed cytokinins: metabolism, signaling, and transport. |
| [96] |
Zubko E, Adams CJ, Macháèková I, Malbeck J, Scollan C, et al. 2002. Activation tagging identifies a gene from Petunia hybrida responsible for the production of active cytokinins in plants. |
| [97] |
Yuan J, Chen D, Ren Y, Zhang X, Zhao J. 2008. Characteristic and expression analysis of a metallothionein gene, OsMT2b, down-regulated by cytokinin suggests functions in root development and seed embryo germination of rice. |
| [98] |
Rijavec T, Dermastia M. 2010. Cytokinins and their function in developing seeds. Acta Chimica Slovenica 57(3):617−29 |
| [99] |
Xiong M, Yu J, Wang J, Gao Q, Huang L, et al. 2022. Brassinosteroids regulate rice seed germination through the BZR1-RAmy3D transcriptional module. |
| [100] |
Ablazov A, Votta C, Fiorilli V, Wang JY, Aljedaani F, et al. 2023. ZAXINONE SYNTHASE 2 regulates growth and arbuscular mycorrhizal symbiosis in rice. |
| [101] |
Zhao J, Liu S, Zhao X, Huang Z, Sun S, et al. 2024. Rice gene OsUGT75A regulates seedling emergence under deep-sowing conditions. |
| [102] |
Lee S, Kim SG, Park CM. 2010. Salicylic acid promotes seed germination under high salinity by modulating antioxidant activity in Arabidopsis. |
| [103] |
Nishimura N, Tsuchiya W, Moresco JJ, Hayashi Y, Satoh K, et al. 2018. Control of seed dormancy and germination by DOG1-AHG1 PP2C phosphatase complex via binding to heme. |
| [104] |
Nambara E, Okamoto M, Tatematsu K, Yano R, Seo M, et al. 2010. Abscisic acid and the control of seed dormancy and germination. |
| [105] |
El-Maarouf-Bouteau H, Sajjad Y, Bazin J, Langlade N, Cristescu SM, et al. 2015. Reactive oxygen species, abscisic acid and ethylene interact to regulate sunflower seed germination. |
| [106] |
Arc E, Sechet J, Corbineau, Rajjou F, Marion-Poll A. 2013. ABA crosstalk with ethylene and nitric oxide in seed dormancy and germination. |
| [107] |
Kubeš M, Napier R. 2019. Non-canonical auxin signalling: fast and curious. |
| [108] |
Wang JW, Wang LJ, Mao YB, Cai WJ, Xue HW, et al. 2005. Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis. |
| [109] |
Cheng X, Zhang S, E Z, Yang Z, Cao S, et al. 2025. Maternally expressed FERTILIZATION-INDEPENDENT ENDOSPERM1 regulates seed dormancy and aleurone development in rice. |
| [110] |
Yang L, Cheng Y, Yuan C, Zhou Y, Huang Q, et al. 2025. The long noncoding RNA VIVIpary promotes seed dormancy release and pre-harvest sprouting through chromatin remodeling in rice. |
| [111] |
Song X, Tang S, Liu H, Meng Y, Luo H, et al. 2025. Inheritance of acquired adaptive cold tolerance in rice through DNA methylation. |