| [1] |
Zhang P, Sun Y, Zhou J, Li J, Yu R, et al. 2024. Specific responses in soil metabolite alteration and fungal community decline to the long-term monocropping of Lisianthus. |
| [2] |
Huang LF, Song LX, Xia XJ, Mao WH, Shi K, et al. 2013. Plant-soil feedbacks and soil sickness: from mechanisms to application in agriculture. |
| [3] |
Fujii K, Shibata M, Kitajima K, Ichie T, Kitayama K, et al. 2018. Plant–soil interactions maintain biodiversity and functions of tropical forest ecosystems. |
| [4] |
Bennett JA, Klironomos J. 2019. Mechanisms of plant–soil feedback: interactions among biotic and abiotic drivers. |
| [5] |
van der Putten WH, Bardgett RD, Bever JD, Bezemer TM, Casper BB, et al. 2013. Plant–soil feedbacks: the past, the present and future challenges. |
| [6] |
Fry EL, Johnson GN, Hall AL, Pritchard WJ, Bullock JM, et al. 2018. Drought neutralises plant–soil feedback of two mesic grassland forbs. |
| [7] |
Pervaiz ZH, Iqbal J, Zhang Q, Chen D, Wei H, et al. 2020. Continuous cropping alters multiple biotic and abiotic indicators of soil health. |
| [8] |
Bennett JA, Maherali H, Reinhart KO, Lekberg Y, Hart MM, et al. 2017. Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics. |
| [9] |
Smith‐Ramesh LM, Reynolds HL. 2017. The next frontier of plant–soil feedback research: unraveling context dependence across biotic and abiotic gradients. |
| [10] |
Kulmatiski A, Beard KH, Norton JM, Heavilin JE, Forero LE, et al. 2017. Live long and prosper: plant–soil feedback, lifespan, and landscape abundance covary. |
| [11] |
Liang Y, Zhao P, Liu B, Sun D, Ruan J, et al. 2024. Genetic mechanisms of petal morphogenesis in Eustoma grandiflorum. |
| [12] |
Mazzoleni S, Bonanomi G, Incerti G, Chiusano ML, Termolino P, et al. 2015. Inhibitory and toxic effects of extracellular self-DNA in litter: a mechanism for negative plant–soil feedbacks? |
| [13] |
Levy-Booth DJ, Campbell RG, Gulden RH, Hart MM, Powell JR, et al. 2007. Cycling of extracellular DNA in the soil environment. |
| [14] |
Mazzoleni S, Cartenì F, Bonanomi G, Senatore M, Termolino P, et al. 2015. Inhibitory effects of extracellular self-DNA: a general biological process? |
| [15] |
Barbero F, Guglielmotto M, Capuzzo A, Maffei ME. 2016. Extracellular Self-DNA (esDNA), but not heterologous plant or insect DNA (etDNA), induces plasma membrane depolarization and calcium signaling in Lima Bean (Phaseolus lunatus) and Maize (Zea mays). |
| [16] |
Duran-Flores D, Heil M. 2018. Extracellular self-DNA as a damage-associated molecular pattern (DAMP) that triggers self-specific immunity induction in plants. |
| [17] |
Carbajal-Valenzuela IA, Medina-Ramos G, Caicedo-Lopez LH, Jiménez-Hernández A, Ortega-Torres AE, et al. 2021. Extracellular DNA: insight of a signal molecule in crop protection. |
| [18] |
Rassizadeh L, Cervero R, Flors V, Gamir J. 2021. Extracellular DNA as an elicitor of broad-spectrum resistance in Arabidopsis thaliana. |
| [19] |
Durán-Flores D, Heil M. 2023. The CpG-dependent plant immune response to self-DNA triggers defence hormone signalling and improves fitness. |
| [20] |
Tjia TOS, Meitha K, Septiani P, Awaludin R, Sumardi D. 2023. Extracellular self-DNA induces local inhibition of growth, regulates production of reactive oxygen species, and gene expression in rice roots. |
| [21] |
Ronchi A, Foscari A, Zaina G, De Paoli E, Incerti G. 2023. Self-DNA early exposure in cultivated and weedy setaria triggers ROS degradation signaling pathways and root growth inhibition. |
| [22] |
Zhou X, Gao H, Zhang X, Khashi U Rahman M, Mazzoleni S, et al. 2023. Plant extracellular self-DNA inhibits growth and induces immunity via the jasmonate signaling pathway. |
| [23] |
Chiusano ML, Incerti G, Colantuono C, Termolino P, Palomba E, et al. 2021. Arabidopsis thaliana response to extracellular DNA: self versus nonself exposure. |
| [24] |
Palomba E, Chiusano ML, Monticolo F, Langella MC, Sanchez M, et al. 2024. Extracellular self-DNA effects on yeast cell cycle and transcriptome during batch growth. |
| [25] |
Fauziah T, Esyanti RR, Meitha K, Iriawati, Hermawaty D, et al. 2025. Cell cycle arrest via DNA damage response (DDR) pathway induced by extracellular self-DNA (esDNA) application in rice root. |
| [26] |
Vega-Muñoz I, Feregrino-Pérez AA, Torres-Pacheco I, Guevara-González RG. 2018. Exogenous fragmented DNA acts as a damage-associated molecular pattern (DAMP) inducing changes in CpG DNA methylation and defence-related responses in Lactuca Sativa. |
| [27] |
Lanzotti V, Grauso L, Mangoni A, Termolino P, Palomba E, et al. 2022. Metabolomics and molecular networking analyses in Arabidopsis thaliana show that extracellular self-DNA affects nucleoside/nucleotide cycles with accumulation of cAMP, cGMP and N6-methyl-AMP. |
| [28] |
Idbella M, Bonanomi G, De Filippis F, Foscari A, Zotti M, et al. 2024. Negative plant-soil feedback in Arabidopsis thaliana: disentangling the effects of soil chemistry, microbiome, and extracellular self-DNA. |
| [29] |
Mazzoleni S, Grauso L, De Falco B, Mangoni A, Termolino P, et al. 2025. Metabolomic changes in Arabidopsis thaliana exposed to extracellular self- and nonself-DNA: a reversible effect. |
| [30] |
Ronchi A, Incerti G, De Paoli E, Panico SC, Sciabbarrasi GL, et al. 2025. Arabidopsis thaliana roots exposed to extracellular self-DNA: evidence of epigenetic effects. |
| [31] |
Barbero F, Guglielmotto M, Islam M, Maffei ME. 2021. Extracellular fragmented self-DNA is involved in plant responses to biotic stress. |
| [32] |
McGovern RJ. 2018. Diseases of Lisianthus. In Handbook of Florists' Crops Diseases, ed. McGovern RJ, ElmerWH. Cham: Springer. pp. 583–632 doi: 10.1007/978-3-319-39670-5_20 |
| [33] |
Foscari A, Alberti G, Zotti M, Incerti G. 2022. Species-specific DNA distribution in spruce–beech forest soil. |
| [34] |
R Core Team. 2025. R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. www.R-project.org |
| [35] |
Jiang J, Ma S, Ye N, Jiang M, Cao J, et al. 2017. WRKY transcription factors in plant responses to stresses. |
| [36] |
Zhou J, Wang X, He Y, Sang T, Wang P, et al. 2020. Differential phosphorylation of the transcription factor WRKY33 by the protein kinases CPK5/CPK6 and MPK3/MPK6 cooperatively regulates camalexin biosynthesis in Arabidopsis. |
| [37] |
Li T, Zhou T, Liang J, Zhang D, Teng N, et al. 2022. Overexpression of lily LlWRKY22 enhances multiple abiotic stress tolerances in transgenic Arabidopsis. |
| [38] |
Li S, Khoso MA, Xu H, Zhang C, Liu Z, et al. 2024. WRKY transcription factors (TFs) as key regulators of plant resilience to environmental stresses: current perspective. |
| [39] |
Movahedi A, Hwarari D, Dzinyela R, Ni S, Yang L. 2025. A close-up of regulatory networks and signaling pathways of MKK5 in biotic and abiotic stresses. |
| [40] |
Hu Y, Dong Q, Yu D. 2012. Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen pseudomonas syringae. |
| [41] |
Negi N, Khurana P. 2021. A salicylic acid inducible mulberry WRKY transcription factor, MiWRKY53 is involved in plant defence response. |
| [42] |
Wani SH, Anand S, Singh B, Bohra A, Joshi R. 2021. WRKY transcription factors and plant defense responses: latest discoveries and future prospects. |
| [43] |
Zhao Y, Zheng Y, Jiang L, Niu Y, Yang Y, et al. 2022. Identification of stress-related characteristics of the WRKY gene family: a case study of Dendrobium catenatum. |
| [44] |
Ullah A, Sun H, Hakim, Yang X, Zhang X. 2018. A novel cotton WRKY gene, GhWRKY6-like, improves salt tolerance by activating the ABA signaling pathway and scavenging of reactive oxygen species. |
| [45] |
Zhang X, Yang Y, Zhao M, Yang L, Jiang J, et al. 2020. Acidovorax citrulli type III effector AopP suppresses plant immunity by targeting the watermelon transcription factor WRKY6. |
| [46] |
Zu G, Guo Z, Yang H, Tang Y, He Y, et al. 2025. Manganese superoxide dismutase 4 interacting with WRKY6 enhances cadmium tolerance in potato plants. |
| [47] |
Trujillo M, Ichimura K, Casais C, Shirasu K. 2008. Negative regulation of PAMP-triggered immunity by an E3 ubiquitin ligase triplet in Arabidopsis. |
| [48] |
Furlan G, Nakagami H, Eschen-Lippold L, Jiang X, Majovsky P, et al. 2017. Changes in PUB22 ubiquitination modes triggered by MITOGEN-ACTIVATED PROTEIN KINASE3 dampen the immune response. |
| [49] |
Zhou B, Zeng L. 2018. The tomato U-box type E3 ligase PUB13 acts with group III ubiquitin E2 enzymes to modulate FLS2-mediated immune signaling. |
| [50] |
Wang L, Bian L, Shi Q, Li X, Sun Y, et al. 2024. The Vitis yeshanensis U-box E3 ubiquitin ligase VyPUB21 enhances resistance to powdery mildew by targeting degradation of NIM1-interacting (NIMIN) protein. |
| [51] |
Yi SY, Nekrasov V, Ichimura K, Kang SY, Shirasu K. 2024. Plant U-box E3 ligases PUB20 and PUB21 negatively regulate pattern-triggered immunity in arabidopsis. |
| [52] |
Dou R, Miguel VN, Grubb LE, Rana M, Saltzman B, et al. 2025. Class IV plant U-box proteins function redundantly to optimize protein accumulation of receptor-like cytoplasmic kinase BIK1. |
| [53] |
Ramírez Gaona M, van Tuinen A, Schipper D, Ramos Peregrina Á, Visser RGF, et al. 2025. Mutation of PUB21 in tomato leads to reduced susceptibility to necrotrophic fungi. |
| [54] |
Mazzoleni S, Cartenì F, Bonanomi G, Incerti G, Chiusano ML, et al. 2014. New perspectives on the use of nucleic acids in pharmacological applications: inhibitory action of extracellular self-DNA in biological systems. |
| [55] |
Zou Y, Li C, Wang K, Li M, Yang S, et al. 2024. Inhibition of Rhizopus rot in postharvest peach fruit during storage by specific extracellular fragmented self-DNA treatment. |
| [56] |
Zou Y, Yang S, Ren Q, Chen J, Wang K, et al. 2024. Extracellular self-DNA as a DAMP signal for induced systemic resistance to anthracnose rot in postharvest loquat fruit via EjRAV2-EjERF39 module. |
| [57] |
Carbajal-Valenzuela IA, Guzmán-Cruz R, González-Chavira MM, Medina-Ramos G, Serrano-Jamaica LM, et al. 2022. Response of plant immunity markers to early and late application of extracellular DNA from different sources in tomato (Solanum lycopersicum). |
| [58] |
Vega-Muñoz I, Herrera-Estrella A, Martínez-de la Vega O, Heil M. 2023. ATM and ATR, two central players of the DNA damage response, are involved in the induction of systemic acquired resistance by extracellular DNA, but not the plant wound response. |
| [59] |
Li C, Wang K, Zou Y, Lei C, Chen Z, et al. 2023. Extracellular self-DNA induced a PTI-related local defence against Rhizopus rot in postharvest peach fruit. |
| [60] |
Bonanomi G, Zotti M, Idbella M, Termolino P, De Micco V, et al. 2022. Field evidence for litter and self‐DNA inhibitory effects on Alnus glutinosa roots. |
| [61] |
Shu LJ, Kahlon PS, Ranf S. 2023. The power of patterns: new insights into pattern‐triggered immunity. |
| [62] |
Boller T, Felix G. 2009. A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. |
| [63] |
Postel S, Kemmerling B. 2009. Plant systems for recognition of pathogen-associated molecular patterns. |
| [64] |
Heil M, Land WG. 2014. Danger signals - damaged-self recognition across the tree of life. |
| [65] |
Monaghan J, Zipfel C. 2012. Plant pattern recognition receptor complexes at the plasma membrane. |
| [66] |
Ravindran B. 2025. Innate immunity and inflammation: conuersim between PAMPS and DAMPS. |
| [67] |
Gust AA, Pruitt R, Nürnberger T. 2017. Sensing danger: key to activating plant immunity. |
| [68] |
Saijo Y, Loo EP. 2019. Plant immunity in signal integration between biotic and abiotic stress responses. |
| [69] |
Zhou JM, Zhang Y. 2020. Plant immunity: danger perception and signaling. |
| [70] |
Huot B, Yao J, Montgomery BL, He SY. 2014. Growth–defense tradeoffs in plants: a balancing act to optimize fitness. |
| [71] |
He Z, Webster S, He SY. 2022. Growth–defense trade-offs in plants. |
| [72] |
Gao M, Hao Z, Ning Y, He Z. 2024. Revisiting growth–defence trade‐offs and breeding strategies in crops. |
| [73] |
Wen F, VanEtten HD, Tsaprailis G, Hawes MC. 2007. Extracellular proteins in Pea root tip and border cell exudates. |
| [74] |
Wen F, White GJ, VanEtten HD, Xiong Z, Hawes MC. 2009. Extracellular DNA is required for root tip resistance to fungal infection. |
| [75] |
Driouich A, Follet-Gueye ML, Vicré-Gibouin M, Hawes M. 2013. Root border cells and secretions as critical elements in plant host defense. |
| [76] |
Tran TM, MacIntyre A, Hawes M, Allen C. 2016. Escaping underground nets: extracellular DNases degrade plant extracellular traps and contribute to virulence of the plant pathogenic bacterium Ralstonia solanacearum. |
| [77] |
Driouich A, Smith C, Ropitaux M, Chambard M, Boulogne I, et al. 2019. Root extracellular traps versus neutrophil extracellular traps in host defence, a case of functional convergence? |
| [78] |
Monticolo F, Palomba E, Termolino P, Chiaiese P, De Alteriis E, et al. 2020. The role of DNA in the extracellular environment: a focus on NETs, RETs and biofilms. |