| [1] |
Butterbach-Bahl K, Baggs EM, Dannenmann M, Kiese R, Zechmeister-Boltenstern S. 2013. Nitrous oxide emissions from soils: how well do we understand the processes and their controls? |
| [2] |
Laughlin RJ, Stevens RJ. 2002. Evidence for fungal dominance of denitrification and codenitrification in a grassland soil. |
| [3] |
Shoun H, Fushinobu S, Jiang L, Kim SW, Wakagi T. 2012. Fungal denitrification and nitric oxide reductase cytochrome P450nor. |
| [4] |
Philippot L, Čuhel J, Saby NPA, Chèneby D, Chroňáková A, et al. 2009. Mapping field-scale spatial patterns of size and activity of the denitrifier community. |
| [5] |
Zumft WG. 1997. Cell biology and molecular basis of denitrification. |
| [6] |
Liang Y, Wu C, Wei X, Liu Y, Chen X, et al. 2021. Characterization of nirS- and nirK-containing communities and potential denitrification activity in paddy soil from eastern China. |
| [7] |
Shan J, Sanford RA, Chee-Sanford J, Ooi SK, Löffler FE, et al. 2021. Beyond denitrification: the role of microbial diversity in controlling nitrous oxide reduction and soil nitrous oxide emissions. |
| [8] |
Hu YQ, Zeng YX, Du Y, Zhao W, Li HR, et al. 2023. Comparative genomic analysis of two Arctic Pseudomonas strains reveals insights into the aerobic denitrification in cold environments. |
| [9] |
Giles M, Morley N, Baggs EM, Daniell TJ. 2012. Soil nitrate reducing processes – drivers, mechanisms for spatial variation, and significance for nitrous oxide production. |
| [10] |
Li Z, Tang Z, Song Z, Chen W, Tian D, et al. 2022. Variations and controlling factors of soil denitrification rate. |
| [11] |
Maeda K, Spor A, Edel-Hermann V, Heraud C, Breuil MC, et al. 2015. N2O production, a widespread trait in fungi. |
| [12] |
Bösch Y, Pold G, Saghaï A, Karlsson M, Jones CM, et al. 2023. Distribution and environmental drivers of fungal denitrifiers in global soils. |
| [13] |
Ambus P, Zechmeister-Boltenstern S. 2007. Denitrification and N-cycling in forest ecosystems. In Biology of the Nitrogen Cycle, eds. Bothe H, Ferguson SJ, Newton WE. Amsterdam: Elsevier. pp. 343–358 doi: 10.1016/b978-044452857-5.50023-0 |
| [14] |
Jeewani PH, Brown RW, Rhymes JM, Evans CD, Chadwick DR, et al. 2025. Restoring degraded agricultural peatlands: how rewetting, biochar, and iron sulphate synergistically modify microbial hotspots and carbon storage. |
| [15] |
Wang C, Kuzyakov Y. 2024. Mechanisms and implications of bacterial–fungal competition for soil resources. |
| [16] |
Intergovernmental Panel on Climate Change (IPCC). 2023. Climate change 2022 – impacts, adaptation and vulnerability: Working group II contribution to the sixth assessment report of the intergovernmental panel on climate change. Cambridge: Cambridge University Press. doi: 10.1017/9781009325844 |
| [17] |
Abdalla M, Jones M, Ambus P, Williams M. 2010. Emissions of nitrous oxide from Irish arable soils: effects of tillage and reduced N input. |
| [18] |
Greaver TL, Clark CM, Compton JE, Vallano D, Talhelm AF, et al. 2016. Key ecological responses to nitrogen are altered by climate change. |
| [19] |
Cosentino VRN, Figueiro Aureggui SA, Taboada MA. 2013. Hierarchy of factors driving N2O emissions in non-tilled soils under different crops. |
| [20] |
Davidson EA, Janssens IA. 2006. Temperature sensitivity of soil carbon decomposition and feedbacks to climate change. |
| [21] |
Kim M, Lim HS, Hyun CU, Cho A, Noh HJ, et al. 2019. Local-scale variation of soil bacterial communities in ice-free regions of maritime Antarctica. |
| [22] |
Cui P, Fan F, Yin C, Song A, Huang P, et al. 2016. Long-term organic and inorganic fertilization alters temperature sensitivity of potential N2O emissions and associated microbes. |
| [23] |
Xu X, Liu X, Li Y, Ran Y, Liu Y, et al. 2017. High temperatures inhibited the growth of soil bacteria and archaea but not that of fungi and altered nitrous oxide production mechanisms from different nitrogen sources in an acidic soil. |
| [24] |
Tan X, Shao D, Gu W. 2018. Effects of temperature and soil moisture on gross nitrification and denitrification rates of a Chinese lowland paddy field soil. |
| [25] |
Jiang M, Tian Y, Guo R, Li S, Guo J, et al. 2023. Effects of warming and nitrogen addition on soil fungal and bacterial community structures in a temperate meadow. |
| [26] |
Qiu Y, Zhang K, Zhao Y, Zhao Y, Wang B, et al. 2023. Climate warming suppresses abundant soil fungal taxa and reduces soil carbon efflux in a semi-arid grassland. |
| [27] |
Anderson JPE, Domsch KH. 1975. Measurement of bacterial and fungal contributions to respiration of selected agricultural and forest soils. |
| [28] |
Abbas T, Zhou H, Zhang Q, Li Y, Liang Y, et al. 2019. Anammox co-fungi accompanying denitrifying bacteria are the thieves of the nitrogen cycle in paddy-wheat crop rotated soils. |
| [29] |
Rohe L, Anderson TH, Flessa H, Goeske A, Lewicka-Szczebak D, et al. 2021. Comparing modified substrate-induced respiration with selective inhibition (SIRIN) and N2O isotope approaches to estimate fungal contribution to denitrification in three arable soils under anoxic conditions. |
| [30] |
Keuschnig C, Gorfer M, Li G, Mania D, Frostegård Å, et al. 2020. NO and N2O transformations of diverse fungi in hypoxia: evidence for anaerobic respiration only in Fusarium strains. |
| [31] |
Sutka RL, Ostrom NE, Ostrom PH, Breznak JA, Gandhi H, et al. 2006. Distinguishing nitrous oxide production from nitrification and denitrification on the basis of isotopomer abundances. |
| [32] |
Toyoda S, Mutobe H, Yamagishi H, Yoshida N, Tanji Y. 2005. Fractionation of N2O isotopomers during production by denitrifier. |
| [33] |
Wu D, Köster JR, Cárdenas LM, Brüggemann N, Lewicka-Szczebak D, et al. 2016. N2O source partitioning in soils using 15N site preference values corrected for the N2O reduction effect. |
| [34] |
Kögel-Knabner I, Amelung W, Cao Z, Fiedler S, Frenzel P, et al. 2010. Biogeochemistry of paddy soils. |
| [35] |
Akiyama H, Yagi K, Yan X. 2005. Direct N2O emissions from rice paddy fields: summary of available data. |
| [36] |
Zou J, Huang Y, Zheng X, Wang Y. 2007. Quantifying direct N2O emissions in paddy fields during rice growing season in mainland China: dependence on water regime. |
| [37] |
Zhu T, Zhang J, Yang W, Cai Z. 2013. Effects of organic material amendment and water content on NO, N2O, and N2 emissions in a nitrate-rich vegetable soil. |
| [38] |
Liu Y, Ge T, Ye J, Liu S, Shibistova O, et al. 2019. Initial utilization of rhizodeposits with rice growth in paddy soils: rhizosphere and N fertilization effects. |
| [39] |
Zhou M, Zhu B, Wang S, Zhu X, Vereecken H, et al. 2017. Stimulation of N2O emission by manure application to agricultural soils may largely offset carbon benefits: a global meta-analysis. |
| [40] |
Wang J, Song Y, Ma T, Raza W, Li J, et al. 2017. Impacts of inorganic and organic fertilization treatments on bacterial and fungal communities in a paddy soil. |
| [41] |
Jia L, Yang H, Li Y, Du Z, Ju X, et al. 2025. Soil clay content determined the temperature response of N2O emissions derived from denitrification. |
| [42] |
Rohe L, Anderson TH, Braker G, Flessa H, Giesemann A, et al. 2014. Dual isotope and isotopomer signatures of nitrous oxide from fungal denitrification − a pure culture study: isotopomer signatures of N2O from fungal denitrification. |
| [43] |
Gee GW, Bauder JW. 1986. Particle-size analysis. In Methods of Soil Analysis: Part 1 Physical and Mineralogical Methods, ed. Klute A. Madison, WI: American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. pp. 383−411. doi: 10.2136/sssabookser5.1.2ed.c15 |
| [44] |
Petersen DG, Blazewicz SJ, Firestone M, Herman DJ, Turetsky M, et al. 2012. Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska. |
| [45] |
Zhao C, Liu B, Piao S, Wang X, Lobell DB, et al. 2017. Temperature increase reduces global yields of major crops in four independent estimates. |
| [46] |
Su X, Wen T, Wang Y, Xu J, Cui L, et al. 2021. Stimulation of N2O emission via bacterial denitrification driven by acidification in estuarine sediments. |
| [47] |
Ostrom NE, Sutka R, Ostrom PH, Grandy AS, Huizinga KM, et al. 2010. Isotopologue data reveal bacterial denitrification as the primary source of N2O during a high flux event following cultivation of a native temperate grassland. |
| [48] |
Toyoda S, Yoshida N, Koba K. 2017. Isotopocule analysis of biologically produced nitrous oxide in various environments. |
| [49] |
Hedges LV, Gurevitch J, Curtis PS. 1999. The meta-analysis of response ratios in experimental ecology. |
| [50] |
Luo Y, Hui D, Zhang D. 2006. Elevated CO2 stimulates net accumulations of carbon and nitrogen in land ecosystems: a meta-analysis. |
| [51] |
Wang X, Li Ye, Waqas MA, Wang B, Hassan W, et al. 2021. Divergent terrestrial responses of soil N2O emissions to different levels of elevated CO2 and temperature. |
| [52] |
Xu R, Tian H, Pan S, Prior SA, Feng Y, et al. 2020. Global N2O emissions from cropland driven by nitrogen addition and environmental factors: comparison and uncertainty analysis. |
| [53] |
Rinnan R, Rousk J, Yergeau E, Kowalchuk GA, Bååth E. 2009. Temperature adaptation of soil bacterial communities along an Antarctic climate gradient: predicting responses to climate warming. |
| [54] |
Ghimire U, Shrestha NK, Biswas A, Wagner-Riddle C, Yang W, et al. 2020. A review of ongoing advancements in soil and water assessment tool (SWAT) for nitrous oxide (N2O) modeling. |
| [55] |
Smith TP, Thomas TJH, García-Carreras B, Sal S, Yvon-Durocher G, et al. 2019. Community-level respiration of prokaryotic microbes may rise with global warming. |
| [56] |
Chen Z, Wang Q, Ma J, Zou P, Yu Q, et al. 2020. Fungal community composition change and heavy metal accumulation in response to the long-term application of anaerobically digested slurry in a paddy soil. |
| [57] |
Wang H, Li J, Chen H, Liu H, Nie M. 2022. Enzymic moderations of bacterial and fungal communities on short- and long-term warming impacts on soil organic carbon. |
| [58] |
Chen Q, Han F, Lyu M, Zeng Z, Cai Y, et al. 2025. Distinct responses of fungal and bacterial denitrification genes to seasonal changes, nitrogen deposition and precipitation reduction in subtropical forest soils. |
| [59] |
Roothans N, Van Loosdrecht MCM, Laureni M. 2025. Metabolic labour division trade-offs in denitrifying microbiomes. |
| [60] |
Deng X, Xu T, Zhang F, Xue L, Yang L, et al. 2024. Effects of warming and fertilization on nirK-, nirS- and nosZ-type denitrifier communities in paddy soil. |
| [61] |
Xing XY, Tang YF, Xu HF, Qin HL, Liu Y, et al. 2021. Warming shapes nirS- and nosZ-type denitrifier communities and stimulates N2O emission in acidic paddy soil. |
| [62] |
Xue P, Minasny B, McBratney AB. 2022. Land-use affects soil microbial co-occurrence networks and their putative functions. |
| [63] |
Tang Y, Minasny B, McBratney A. 2024. Partitioning denitrification pathways in N2O emissions from re-flooded dry paddy soils. |
| [64] |
Xiao X, Delgado-Baquerizo M, Shen H, Ma Z, Zhou J, et al. 2023. Microbial interactions related to N2O emissions and temperature sensitivity from rice paddy fields. |