[1]

Distel DL. 2000. Phylogenetic relationships among Mytilidae (Bivalvia): 18S rRNA data suggest convergence in mytilid body plans. Molecular Phylogenetics and Evolution 15:25−33

doi: 10.1006/mpev.1999.0733
[2]

Soot-Ryen T. 1955. A Report on the Family Mytilidae (Pelecypoda). Volume 20. Los Angeles: University of Southern California Press. 174 pp
[3]

Karube Z, Inuzuka Y, Tanaka A, Kurishima K, Kihou N, et al. 2016. Radiostrontium monitoring of bivalves from the Pacific coast of eastern Japan. Environmental Science and Pollution Research 23:17095−17104

doi: 10.1007/s11356-016-6878-8
[4]

Shulkin VM, Kavun VY. 2018. The concentrations of trace metals in the soft tissues of the mytilid mollusk Septifer bilocularis (Linnaeus, 1758) as a possible indicator of water quality at coastal coral reefs of Vietnam. Russian Journal of Marine Biology 44:75−83

doi: 10.1134/S1063074018010108
[5]

Zuykov M, Pelletier E, Harper DAT. 2013. Bivalve mollusks in metal pollution studies: from bioaccumulation to biomonitoring. Chemosphere 93:201−208

doi: 10.1016/j.chemosphere.2013.05.001
[6]

Prestes JG, Carneiro L, Miiller NOR, Neundorf AKA, Pedroso CR, et al. 2024. A systematic review of invasive non-native freshwater bivalves. Biological Reviews 99:2082−2107

doi: 10.1111/brv.13113
[7]

Pojeta JJ, Zhang RJ, Yang ZY. 1986. Systematic paleontology of Devonian pelecypods of Guangxi and Michigan. In Devonian Rocks and Lower and Middle Devonian Pelecypods of Guangxi, China, and the Traverse Group of Michigan, ed. Pojeta JJ. Reston, VA: US Geological Survey. pp. 57–102 doi: 10.3133/pp1394AG
[8]

Bieler R, Mikkelsen PM. 2006. Bivalvia – a look at the Branches. Zoological Journal of the Linnean Society 148:223−235

doi: 10.1111/j.1096-3642.2006.00255.x
[9]

Coan EV, Valentich-Scott P, Bernard FR. 2000. Bivalve Seashells of Western North America: Marine Mollusks From Arctic Alaska to Baja California. Volume 2. Santa Barbara: Santa Barbara Museum of Natural History. 764 pp
[10]

Habe T. 1977. Systematics of Mollusca in Japan: Bivalvia and Scaphopoda. Toyko: Hokuryukan. 372 pp
[11]

Newell N. 1969. Classification of Bivalvia. In Treatise on Invertebrate Paleontology, ed. Moore RC. New York: Geological Society of America. pp. 205–224
[12]

Wang ZR. 1997. Fauna Sinica Invertebrata Phylum Mollusca Bivalvia: Mytiloida. Beijing: China Science Press. 268 pp
[13]

Carter JG, Altaba CR, Anderson LC, Araujo R, Biakov AS, et al. 2011. A synoptical classification of the Bivalvia (Mollusca). Paleontological Contributions 4:1−47

doi: 10.17161/pc.1808.8287
[14]

Morton B. 2015. Evolution and adaptive radiation in the Mytiloidea (Bivalvia): clues from the pericardial–posterior byssal retractor musculature complex. Molluscan Research 35:227−245

doi: 10.1080/13235818.2015.1053167
[15]

Scarlato OA, Starobogatov YI. 1979. General evolutionary patterns and the system of the class Bivalvia. In Proceedings of the Zoological Institute, ed. Starobogatov YI. Vol. 80. Leningrad, Moscow: Trudy Zoologicheskogo Instituta. pp. 5–38 doi: 10.5962/bhl.title.141067
[16]

Tan KS, Tan SHM. 2024. Tussles with mussels: mytiloidean phylogeny revisited (Bivalvia: Pteriomorphia). Journal of Molluscan Studies 90:eyae039

doi: 10.1093/mollus/eyae039
[17]

Kartavtsev YP, Sharina SN, Chichvarkhin AY, Chichvarkhina OV, Masalkova NA, et al. 2018. Genetic divergence of mussels (Mollusca, Mytilidae) based on the 28S rRNA, 18S rRNA, and H3 nuclear gene sequences. Russian Journal of Genetics 54:652−669

doi: 10.1134/s1022795418060078
[18]

Lee Y, Kwak H, Shin J, Kim SC, Kim T, et al. 2019. A mitochondrial genome phylogeny of Mytilidae (Bivalvia: Mytilida). Molecular Phylogenetics and Evolution 139:106533

doi: 10.1016/j.ympev.2019.106533
[19]

Liu J, Liu HL, Zhang H. 2018. Phylogeny and evolutionary radiation of the marine mussels (Bivalvia: Mytilidae) based on mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 126:233−240

doi: 10.1016/j.ympev.2018.04.019
[20]

Gerdol M, Fujii Y, Hasan I, Koike T, Shimojo S, et al. 2017. The purplish bifurcate mussel Mytilisepta virgata gene expression atlas reveals a remarkable tissue functional specialization. BMC Genomics 18:590

doi: 10.1186/s12864-017-4012-z
[21]

Morton B, Leung PTY, Wei J, Lee GY. 2020. A morphological and genetic comparison of Septifer bilocularis, Mytilisepta virgata and Brachidontes variabilis (Bivalvia: Mytiloidea) from Hong Kong and erection of the Mytiliseptiferinae sub-fam. nov. Regional Studies in Marine Science 34:100981

doi: 10.1016/j.rsma.2019.100981
[22]

García-Souto D, Sumner-Hempel A, Fervenza S, Pérez-García C, Torreiro A, et al. 2017. Detection of invasive and cryptic species in marine mussels (Bivalvia, Mytilidae): a chromosomal perspective. Journal for Nature Conservation 39:58−67

doi: 10.1016/j.jnc.2017.07.005
[23]

Krauss F. 1848. Die südafrikanischen Mollusken; ein Beitrag zur Kenntniss der Mollusken des Kap- und Natallandes und zur geographischen Verbreitung derselben, mit Beschreibung und Abbildung der neuen Arten. Stuttgart: Ebner & Seubert. 140 pp. doi: 10.5962/bhl.title.13936
[24]

Seed RB. 1980. Shell growth and form in the Bivalvia. In Skeletal Growth of Aquatic Organisms, ed. Rhoads D. New York: Springer. pp. 23–67
[25]

Tanaka MO, Magalhães CAd. 1999. Morphometric Species recognition in Brachidontes darwinianus and Brachidontes solisianus (Bivalvia: Mytilidae). Veliger 42:267−274
[26]

Huber M. 2010. Compendium of Bivalves: A full-Color Guide to 3, 300 of the World's Marine Bivalves. A Status on Bivalvia After 250 Years of Research. Hackenheim: ConchBooks. 901 pp
[27]

Tan KS, Tan S, Sanpanich K, Duangdee T, Ambarwati R. 2021. Taxonomic re-description and relationships of two mat-forming mussels from the indo-pacific region, with a proposed new genus. Phuket Marine Biological Center Research Bulletin 78:77−115

doi: 10.14456/pmbcrb.2021.7
[28]

Lee T, Foighil DO. 2004. Hidden Floridian biodiversity: mitochondrial and nuclear gene trees reveal four cryptic species within the scorched mussel, Brachidontes exustus, species complex. Molecular Ecology 13:3527−3542

doi: 10.1111/j.1365-294X.2004.02337.x
[29]

Terranova MS, Brutto SL, Arculeo M, Mitton JB. 2007. A mitochondrial phylogeography of Brachidontes variabilis (Bivalvia: Mytilidae) reveals three cryptic species. Journal of Zoological Systematics and Evolutionary Research 45:289−298

doi: 10.1111/j.1439-0469.2007.00421.x
[30]

Yang L, Tan Z, Wang D, Xue L, Guan MX, et al. 2014. Species identification through mitochondrial rRNA genetic analysis. Scientific Reports 4:4089

doi: 10.1038/srep04089
[31]

Plazzi F, Ceregato A, Taviani M, Passamonti M. 2011. A molecular phylogeny of bivalve mollusks: ancient radiations and divergences as revealed by mitochondrial genes. PLoS One 6:e27147

doi: 10.1371/journal.pone.0027147
[32]

Liu YM, Ma PZ, Zhang Z, Li C, Chen Y, et al. 2022. The new phylogenetic relationships in Veneridae (Bivalvia: Venerida). Zoological Journal of the Linnean Society 196:346−365

doi: 10.1093/zoolinnean/zlac047
[33]

Malkócs T, Viricel A, Becquet V, Evin L, Dubillot E, et al. 2022. Complex mitogenomic rearrangements within the Pectinidae (Mollusca: Bivalvia). BMC Ecology and Evolution 22:29

doi: 10.1186/s12862-022-01976-0
[34]

Zouros E. 2013. Biparental inheritance through uniparental transmission: the doubly uniparental inheritance (DUI) of mitochondrial DNA. Evolutionary Biology 40:1−31

doi: 10.1007/s11692-012-9195-2
[35]

Hoeh WR, Stewart DT, Sutherland BW, Zouros E. 1996. Multiple origins of gender-associated mitochondrial DNA lineages in Bivalves (Mollusca: Bivalvia). Evolution 50:2276−2286

doi: 10.1111/j.1558-5646.1996.tb03616.x
[36]

Morton B. 2019. The biology and functional morphology of Septifer bilocularis and Mytilisepta virgata (Bivalvia: Mytiloidea) from corals and the exposed rocky shores, respectively, of Hong Kong. Regional Studies in Marine Science 25:100454

doi: 10.1016/j.rsma.2018.100454
[37]

Schubert M, Lindgreen S, Orlando L. 2016. AdapterRemoval v2: rapid adapter trimming, identification, and read merging. BMC Research Notes 9:88

doi: 10.1186/s13104-016-1900-2
[38]

Coil D, Jospin G, Darling AE. 2015. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics 31:587−589

doi: 10.1093/bioinformatics/btu661
[39]

Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. Journal of Computational Biology 19:455−477

doi: 10.1089/cmb.2012.0021
[40]

Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, et al. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Molecular Phylogenetics and Evolution 69:313−319

doi: 10.1016/j.ympev.2012.08.023
[41]

Laslett D, Canbäck B. 2008. ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics 24:172−175

doi: 10.1093/bioinformatics/btm573
[42]

Grant JR, Enns E, Marinier E, Mandal A, Herman EK, et al. 2023. Proksee: in-depth characterization and visualization of bacterial genomes. Nucleic Acids Research 51:W484−W492

doi: 10.1093/nar/gkad326
[43]

Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33:1870−1874

doi: 10.1093/molbev/msw054
[44]

Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, et al. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Molecular Ecology Resources 20:348−355

doi: 10.1111/1755-0998.13096
[45]

Xia X. 2017. DAMBE6: new tools for microbial genomics, phylogenetics, and molecular evolution. The Journal of Heredity 108:431−437

doi: 10.1093/jhered/esx033
[46]

Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754−755

doi: 10.1093/bioinformatics/17.8.754
[47]

Bernt M, Merkle D, Ramsch K, Fritzsch G, Perseke M, et al. 2007. CREx: inferring genomic rearrangements based on common intervals. Bioinformatics 23:2957−2958

doi: 10.1093/bioinformatics/btm468
[48]

Puillandre N, Brouillet S, Achaz G. 2021. ASAP: assemble species by automatic partitioning. Molecular Ecology Resources 21:609−620

doi: 10.1111/1755-0998.13281
[49]

Zhang J, Kapli P, Pavlidis P, Stamatakis A. 2013. A general species delimitation method with applications to phylogenetic placements. Bioinformatics 29:2869−2876

doi: 10.1093/bioinformatics/btt499
[50]

Yang ZH, Rannala B. 2006. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Molecular Biology and Evolution 23:212−226

doi: 10.1093/molbev/msj024
[51]

Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14:587−589

doi: 10.1038/nmeth.4285
[52]

Kazuo O, Masako I. 1988. Early pleistocene fossil mollusca from the sea of Japan off Yamaguchi Prefecture. Saito Ho-on Kai Special Publication 1:523−532
[53]

Kříž J. 2008. A new bivalve community from the lower Ludlow of the Prague Basin (Perunica, Bohemia). Bulletin of Geosciences 83:237−280

doi: 10.3140/bull.geosci.2008.03.237
[54]

Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. 2018. Posterior summarization in Bayesian phylogenetics using tracer 1.7. Systematic Biology 67:901−904

doi: 10.1093/sysbio/syy032
[55]

Owada M. 2007. Functional morphology and phylogeny of the rock-boring bivalves Leiosolenus and Lithophaga (Bivalvia: Mytilidae): a third functional clade. Marine Biology 150:853−860

doi: 10.1007/s00227-006-0409-y
[56]

Uliano-Silva M, Americo JA, Costa I, Schomaker-Bastos A, de Freitas Rebelo M, et al. 2016. The complete mitochondrial genome of the golden mussel Limnoperna fortunei and comparative mitogenomics of Mytilidae. Gene 577:202−208

doi: 10.1016/j.gene.2015.11.043
[57]

Gissi C, Iannelli F, Pesole G. 2008. Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity 101:301−320

doi: 10.1038/hdy.2008.62
[58]

Breton S, Stewart DT, Hoeh WR. 2010. Characterization of a mitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): identification of the "missing" ATPase 8 gene. Marine Genomics 3:11−18

doi: 10.1016/j.margen.2010.01.001
[59]

Zhao BJ, Gao ST, Zhao MY, Lv HY, Song JY, et al. 2022. Mitochondrial genomic analyses provide new insights into the "missing" atp8 and adaptive evolution of Mytilidae. BMC Genomics 23:738

doi: 10.1186/s12864-022-08940-8
[60]

Stöger I, Schrödl M. 2013. Mitogenomics does not resolve deep molluscan relationships (yet?). Molecular Phylogenetics and Evolution 69:376−392

doi: 10.1016/j.ympev.2012.11.017
[61]

Som A. 2015. Causes, consequences and solutions of phylogenetic incongruence. Briefings in Bioinformatics 16:536−548

doi: 10.1093/bib/bbu015
[62]

Larson DA, Itgen MW, Denton RD, Hahn MW. 2026. Reconsidering cytonuclear discordance in the genomic age. Evolution 80:1−14

doi: 10.1093/evolut/qpaf201
[63]

Tan SHM, Wells FE, Lukehurst SS, Strong EE, Sanpanich K, et al. 2024. Unravelling the Brachidontes variabilis species complex (Bivalvia: Mytilidae) of the Indo-Pacific region. Journal of Molluscan Studies 90:eyae037

doi: 10.1093/mollus/eyae037
[64]

Darragh TA. 2024. A checklist of Australian marine Cenozoic Mollusca. Memoirs of Museum Victoria 87:37−206

doi: 10.24199/j.mmv.2024.83.02
[65]

Gould AA. 1861. Description of new shells collected by the United States North Pacific Exploring Expedition. In Proceedings of the Boston Society of Natural History, Vol. 7. Boston: Boston Society of Natural History. pp. 161−165 doi: 10.5962/bhl.part.4821
[66]

Berry WBN, Boucot AJ. 1973. Correlation of the African Silurian Rocks. Vol. 147. Boulder: Geological Society of America. 83 pp. doi: 10.1130/SPE147-p1
[67]

Sun WD. 2016. Initiation and evolution of the South China Sea: an overview. Acta Geochimica 35:215−225

doi: 10.1007/s11631-016-0110-x
[68]

Ding WW, Sun Z, Dadd K, Fang YX, Li JB. 2018. Structures within the oceanic crust of the central South China Sea basin and their implications for oceanic accretionary processes. Earth and Planetary Science Letters 488:115−125

doi: 10.1016/j.epsl.2018.02.011
[69]

Liang GH, Zhang BL. 2024. Discussion on the Cenozoic tectonic evolution of the South China Sea from continental margin extension. Geological Bulletin of China 43:20−32

doi: 10.12097/gbc.2022.07.008