Figures (1)  Tables (1)

    • Figure 1. 

      Domestication genes related to critical seed traits in soybean. Black and blue letters represent positive and negative regulatory genes, respectively.

    • Trait Name Locus Conserved domain or function Mutant type Ref.
      Seed size ST1 Glyma.08G109100 UDP-D-glucuronate 4-epimerase SNP in CDS [29]
      GmST05/GmMFT SoyZH13_05G229200 Mother of TFL1 and FT (MFT) Indel and SNP in promoter
      and SNP in CDS      		 [17,50]
      Seed weight SW16.1 Glyma.16G198300 LIM domain-containing transcription factor Indel in CDS [35]
      SW14 Glyma.14G010000 Nuclear factor Y subunit SNP in CDS [33]
      PP2C-1 Glyma17g33690 Putative phosphatase 2C protein Indel and SNPin CDS [36]
      GmSW17/GmSW17.1 SoyZH13_17G105400/
      Glyma.17G109100      		 Ubiquitin-specific protease SNP in CDS [20,37]
      GmSSS1 Glyma.19G196000 Putative O-GlcNAc transferase SNP in CDS [40]
      GmJAZ3 Glyma.09G123600 JASMONATE-ZIM DOMAIN (JAZ) Indel and SNPin promoter [44]
      GmWRKY15a Glyma05g20710 WRKY transcription factor Indel in 5' UTR [45]
      GmPLATZ Glyma.13G147800 AT-rich sequence and zinc-binding (PLATZ) family protein Indel and SNP in promoter [46]
      GmRWOS1 Glyma.12G064800 K-stimulated pyrophosphate-energized sodium pump protein Indel and SNP in CDS [21]
      GsMLP328 Glysoja.20G052861 Soybean major latex protein (MLP) SNP in CDS [42]
      GmPGIP4 Glyma.08G079200 Polygalacturonase-inhibiting proteins (PGIP) SNP in CDS [42]
      GmYUC4a Glyma.14G124100 YUCCA (YUC) flavin monooxygenases Indel in 3' UTR and SNP in downstream region [10]
      Seed oil content and component GmST05/GmMFT SoyZH13_05G229200 Mother of TFL1 and FT (MFT) Indel and SNP in promoter
      and SNP in CDS      		 [17,50]
      GmZF351 Glyma06g44440 Tandem zinc-finger CCCH-domain protein Indel and SNP in promoter [51]
      GmZF392 Glyma.12G205700 Tandem zinc-finger CCCH-domain protein SNP in promoter [54]
      GmSWEET39/
      GmSWEET10a      		 Glyma.15G049200 Sugars will eventually be exported transporter Indel in CDS [18,19,56,57]
      GmNFYA Glyma02g47380 Nuclear factor Y subunit Indel in promoter [54]
      POWR1 Glyma.20G085100 CCT domain Indel in CDS [5]
      GmOLEO1 Glyma.20G196600 Putative oleosin protein Indel and SNP in promoter [59]
      GmFATA1B Glyma.08G349200 Acyl-ACP thioesterases (FAT) Indel in CDS [67]
      FA9 Glyma.09G250400 SEIPIN protein SNP in CDS [68]
      GmERFA Glyma.02G016100 AP2/ERF-type transcription factor Indel and SNP in promoter [55]
      Tocopherol content GmMQT/GmST05 Glyma.NDD2.05G269100 Mother of TFL1 and FT (MFT) SNP in promoter [79]
      GmZF351 Glyma06g44440 Tandem zinc-finger CCCH-domain protein SNP in promoter [76]
      Seed protein content POWR1 Glyma.20G085100 CCT domain Indel in CDS [5]
      GmSWEET10a/
      GmSWEET39      		 Glyma.15G049200 Sugars will eventually be exported transporter Indel in CDS [18,19,56,57]
      GmST05/ GmMFT SoyZH13_05G229200 Mother of TFL1 and FT (MFT) Indel and SNP in promoter
      and SNP in CDS      		 [17,50]
      GmOLEO1 Glyma.20G196600 Putative oleosin protein Indel in promoter [59]
      GmJAZ3 Glyma.09G123600 JASMONATE-ZIM DOMAIN (JAZ) SNP in promoter [44]
      GmSop20 Glyma.20G005900 C2H2-type zinc-finger
      transcription factor      		 Indel in CDS [84]
      GmCG-1 Glyma.10G246300 α' subunit of β-conglycinin SNP in CDS [88]
      GmGASA12 Glyma.08G291900 GA-regulated family protein SNP in CDS and promoter [90]

      Table 1. 

      Published domestication genes related to seed traits in soybean.