| [1] |
Chinemerem Nwobodo D, Ugwu MC, Oliseloke Anie C, Al-Ouqaili MTS, Chinedu Ikem J, et al. 2022. Antibiotic resistance: the challenges and some emerging strategies for tackling a global menace. |
| [2] |
Nature Reviews Microbiology. 2024. Stronger commitment and faster action against antimicrobial resistance. |
| [3] |
Vikesland P, Garner E, Gupta S, Kang S, Maile-Moskowitz A, et al. 2019. Differential drivers of antimicrobial resistance across the world. |
| [4] |
Xin R, Yang F, Zeng Y, Zhang M, Zhang K. 2025. Analysis of antibiotic resistance genes in livestock manure and receiving environment reveals non-negligible risk from extracellular genes. |
| [5] |
Bi W, Butardo V Jr, Sha G, Zhang H, Wu X, et al. 2025. Microbial degradation and pollutant control in aerobic composting and anaerobic digestion of organic wastes: a review. |
| [6] |
Ukachi UO, Rajasekar A, Gao B, Shen W. 2025. Dynamics and mitigation of antibiotic resistance genes during manure composting: a comprehensive review. |
| [7] |
Kundariya N, Mohanty SS, Varjani S, Hao Ngo H, Wong JWC, et al. 2021. A review on integrated approaches for municipal solid waste for environmental and economical relevance: monitoring tools, technologies, and strategic innovations. |
| [8] |
Koushal S, Arya D, Kadam GL, Parmar A, Chauhan N, et al. 2025. Vermicomposting and its role in soil health: a comprehensive review. |
| [9] |
Gómez-Brandón, Aira M, Probst M, Liu N, Zhang Z, et al. 2025. Earthworms attenuate antibiotic resistance genes and mobile genetic elements during vermicomposting of sewage sludge. |
| [10] |
Guo H, Li Z, Sun X, Xing M. 2024. Impact of earthworms on suppressing dissemination of antibiotic resistance genes during vermicomposting treatment of excess sludge. |
| [11] |
Cao Y, Tian Y, Wu Q, Li J, Zhu H. 2021. Vermicomposting of livestock manure as affected by carbon-rich additives (straw, biochar and nanocarbon): a comprehensive evaluation of earthworm performance, microbial activities, metabolic functions and vermicompost quality. |
| [12] |
Li Z, Yang F, Han B, Zhao R, Yang M, et al. 2025. Vermicomposting significantly reduced antibiotic resistance genes in cow manure even under high tetracycline concentrations. |
| [13] |
Mohite DD, Chavan SS, Jadhav VS, Kanase T, Kadam MA, et al. 2024. Vermicomposting: a holistic approach for sustainable crop production, nutrient-rich bio fertilizer, and environmental restoration. |
| [14] |
Ahmed I, Zhuang Z, Zhang D, Li P, Zhang B. 2025. Temperature-driven dynamics of intracellular and extracellular antibiotic resistance genes during aerobic composting: insights from qPCR and metagenomic analysis. |
| [15] |
Zhao E, Li Y, Zhang J, Geng B. 2025. A review on the degradation of antibiotic resistance genes during composting of livestock manure. |
| [16] |
Wen X, Chen M, Ma B, Xu J, Zhu T, et al. 2024. Removal of antibiotic resistance genes during swine manure composting is strongly impaired by high levels of doxycycline residues. |
| [17] |
Liu N, Graham DW, Zhao Y, Yang XR, Li G, et al. 2025. Role of earthworms and their excretion products in reducing antimicrobial resistance and putative pathogens during vermicomposting. |
| [18] |
Ahmad A, Mahmood A, Ahmad S, Li W. 2025. Harnessing earthworms for sustainable waste management: insights into vermicomposting. |
| [19] |
Xu P, Shu L, Yang Y, Kumar S, Tripathi P, et al. 2024. Microbial agents obtained from tomato straw composting effectively promote tomato straw compost maturation and improve compost quality. |
| [20] |
Du H, Lu C, Latif MZ, Du J, Liu Y, et al. 2025. Thermophilic microbial agents promote the fermentation progression of spent mushroom compost and pig manure. |
| [21] |
Li M, Jiang L, Li F, Zhang X, Zhao H, et al. 2025. Microbial agents assisted aerobic co-composting of sheep manure and furfural residue: maturation enhancement and microbial dynamic. |
| [22] |
Xu Y, Xu P, Teng H, Yang S, Lang H, et al. 2025. Short-term high-temperature pretreatment to reduce gaseous emissions and accelerate humification in food waste digestate composting: performance and mechanisms. |
| [23] |
Han L, Li L, Xu X, Ye W, Zhang F, et al. 2024. Utilization of short-term high temperature pretreatment for food waste composting: effects of end-products on soil properties and plant growth. |
| [24] |
Yao Y, Maddamsetti R, Weiss A, Ha Y, Wang T, et al. 2022. Intra- and interpopulation transposition of mobile genetic elements driven by antibiotic selection. |
| [25] |
Sui Q, Chen Y, Yu D, Wang T, Hai Y, et al. 2019. Fates of intracellular and extracellular antibiotic resistance genes and microbial community structures in typical swine wastewater treatment processes. |
| [26] |
Das SR, Dey S, Pradhan A, Nayak BK, Venkatramaiah E, Chatterjee D. 2023. Vermicomposting as a means of removing antibiotic resistance genes (ARGs) from soil and water. In Fate of Biological Contaminants During Recycling of Organic Wastes, eds Huang K, Ahmad Bhat S, Cui G. Amsterdam: Elsevier. pp. 259−278 doi: 10.1016/B978-0-323-95998-8.00005-4 |
| [27] |
Lu XM, Lu PZ. 2019. Synergistic effects of key parameters on the fate of antibiotic resistance genes during swine manure composting. |
| [28] |
Duan M, Gu J, Wang X, Li Y, Zhang S, et al. 2018. Effects of genetically modified cotton stalks on antibiotic resistance genes, intI1, and intI2 during pig manure composting. |
| [29] |
Zhang M, He LY, Liu YS, Zhao JL, Liu WR, et al. 2019. Fate of veterinary antibiotics during animal manure composting. |
| [30] |
Huang K, Xia H, Zhang Y, Li J, Cui G, et al. 2020. Elimination of antibiotic resistance genes and human pathogenic bacteria by earthworms during vermicomposting of dewatered sludge by metagenomic analysis. |
| [31] |
Zhao C, Xin L, Xu X, Qin Y, Wu W. 2022. Dynamics of antibiotics and antibiotic resistance genes in four types of kitchen waste composting processes. |
| [32] |
Zhao Y, Chen W, Zhang P, Cai J, Lou Y, et al. 2022. Microbial cooperation promotes humification to reduce antibiotic resistance genes abundance in food waste composting. |
| [33] |
Tian X, Han B, Liang J, Yang F, Zhang K. 2021. Tracking antibiotic resistance genes (ARGs) during earthworm conversion of cow dung in northern China. |
| [34] |
Cui G, Fu X, Bhat SA, Tian W, Lei X, et al. 2022. Temperature impacts fate of antibiotic resistance genes during vermicomposting of domestic excess activated sludge. |
| [35] |
Yu Z, Zhou M, Zhang H, Yuan L, Lv P, et al. 2024. Changes in Cd forms and Cd resistance genes in municipal sludge during coupled earthworm and biochar composting. |
| [36] |
Kretzschmar A. 1978. Quantification, écologique des galeries de lombriciens Techniques et premières estimations. |
| [37] |
Lavelle P. 1997. Faunal activities and soil processes: adaptive strategies that determine ecosystem function. |
| [38] |
Luo L, Zhang C, Zhang Z, Peng J, Han Y, et al. 2020. Differences in tetracycline antibiotic resistance genes and microbial community structure during aerobic composting and anaerobic digestion. |
| [39] |
Si XG, Qiao ZQ, Peng XY, Ding L, Zhou CP. 2024. Research progress on antibiotic resistance genes in aerobic composting of livestock and poultry manure. |
| [40] |
Zhong WZ, Chen SN, Li Y, Pan ZX, Hong C, et al. 2022. Research progress on the effect of aerobic composting on the growth and decline of antibiotic resistance genes. |
| [41] |
Cui G, Bhat SA, Li W, Wei Y, Kui H, et al. 2019. Gut digestion of earthworms significantly attenuates cell-free and -associated antibiotic resistance genes in excess activated sludge by affecting bacterial profiles. |
| [42] |
Xie T, Lin D, Cai XD, Ma LJ, Wang L, et al. 2025. Nano-biochar regulates phage–host interactions, reducing antibiotic resistance genes in vermicomposting systems. |
| [43] |
Engelmann P, Hayashi Y, Bodó K, Molnár L. 2016. New aspects of earthworm innate immunity: novel molecules and old proteins with unexpected functions. In Lessons in Immunity, eds Ballarin L, Cammarata M. US: Academic Press. pp. 53−66 doi: 10.1016/B978-0-12-803252-7.00004-7 |
| [44] |
Venkatachalam S, Christyraj JRSS, Bosco RBD, Yesudhason BV. 2025. Antimicrobial peptides from earthworms: emerging candidates for novel therapeutic applications. |
| [45] |
Adomako MO, Wu J, Yu FH. 2025. Ecological and evolutionary responses of earthworm holobionts to environmental changes. |
| [46] |
Ni Z, Jia B, Li Y, Latif J, Yuan Y, et al. 2025. Reactive oxygen species generation in earthworm burrows and their impact in drilosphere organic carbon mineralization. |
| [47] |
Li Z, Xing MY, Xiao F, Xing LB. 2022. Succession characteristics of earthworm intestinal microbial community and pathogens under stress of continuous-flow of excess sludge. |
| [48] |
Uribe-Lorío L, Brenes-Guillén L, WingChing-Jones R, Uribe L, García F, et al. 2024. Valorization of cow manure: unraveling bacterial community changes driven by vermicomposting and their impact on vermicompost tea production. |
| [49] |
Lv B, Xing M, Yang J, Zhang L. 2015. Pyrosequencing reveals bacterial community differences in composting and vermicomposting on the stabilization of mixed sewage sludge and cattle dung. |
| [50] |
Chen J, Xia H, Huang K, Li J, Xie J. 2023. Earthworms restructure the distribution of extracellular antibiotics resistance genes of sludge by modifying the structure of extracellular polymeric substances during vermicomposting. |
| [51] |
Araujo Y, Luizão FJ, Barros E. 2004. Effect of earthworm addition on soil nitrogen availability, microbial biomass and litter decomposition in mesocosms. |
| [52] |
Kim YN, Robinson B, Lee KA, Boyer S, Dickinson N. 2017. Interactions between earthworm burrowing, growth of a leguminous shrub and nitrogen cycling in a former agricultural soil. |
| [53] |
Chen Y, Li M, Glibert PM, Heil C. 2023. MurKy waters: modeling the succession from r to K strategists (diatoms to dinoflagellates) following a nutrient release from a mining facility in Florida. |
| [54] |
Wüst PK, Horn MA, Drake HL. 2011. Clostridiaceae and Enterobacteriaceae as active fermenters in earthworm gut content. |
| [55] |
Lin Z, Zhen Z, Luo S, Ren L, Chen Y, et al. 2021. Effects of two ecological earthworm species on tetracycline degradation performance, pathway and bacterial community structure in laterite soil. |
| [56] |
Qi W, Long J, Feng C, Feng Y, Cheng D, et al. 2019. Fe3+ enhanced degradation of oxytetracycline in water by pseudomonas. |
| [57] |
Cui G, Lü F, Zhang H, Shao L, He P. 2020. Critical insight into the fate of antibiotic resistance genes during biological treatment of typical biowastes. |
| [58] |
Gaze WH, Zhang L, Abdouslam NA, Hawkey PM, Calvo-Bado L, et al. 2011. Impacts of anthropogenic activity on the ecology of class 1 integrons and integron-associated genes in the environment. |
| [59] |
Yang M, Peng L, Mu M, Yang F, Li Z, et al. 2025. Significant effects of earthworm species on antibiotic resistome in livestock manure as revealed by metagenomic analysis. |
| [60] |
Huang K, Xia H, Wu Y, Chen J, Cui G, et al. 2018. Effects of earthworms on the fate of tetracycline and fluoroquinolone resistance genes of sewage sludge during vermicomposting. |
| [61] |
Zhao M, Huang K, Wen F, Xia H, Song B. 2025. Biochar reduces plasmid-mediated antibiotic resistance gene transfer in earthworm ecological filters for rural sewage treatment. |
| [62] |
Yang J, Schrader S, Tebbe CC. 2024. Legacy effects of earthworms on soil microbial abundance, diversity, and community dynamics. |
| [63] |
Zhang Q. 2025. Antimicrobial peptides: from discovery to developmental applications. |
| [64] |
Li H, Luo QP, Pu Q, Yang XR, An XL, et al. 2022. Earthworms reduce the dissemination potential of antibiotic resistance genes by changing bacterial co-occurrence patterns in soil. |
| [65] |
McCann CM, Christgen B, Roberts JA, Su JQ, Arnold KE, et al. 2019. Understanding drivers of antibiotic resistance genes in High Arctic soil ecosystems. |
| [66] |
Yan ZZ, Chen QL, Zhang YJ, He JZ, Hu HW. 2019. Antibiotic resistance in urban green spaces mirrors the pattern of industrial distribution. |
| [67] |
Zhu YG, Zhao Y, Li B, Huang CL, Zhang SY, et al. 2017. Continental-scale pollution of estuaries with antibiotic resistance genes. |
| [68] |
Zhu YG, Johnson TA, Su JQ, Qiao M, Guo GX, et al. 2013. Diverse and abundant antibiotic resistance genes in Chinese swine farms. |
| [69] |
Guhra T, Stolze K, Schweizer S, Totsche KU. 2020. Earthworm mucus contributes to the formation of organo-mineral associations in soil. |
| [70] |
Bruno R, Maresca M, Canaan S, Cavalier JF, Mabrouk K, et al. 2019. Worms' antimicrobial peptides. |
| [71] |
Phillips HRP, Guerra CA, Bartz MLC, Briones MJI, Brown G, et al. 2019. Global distribution of earthworm diversity. |
| [72] |
Suzuki G, Murakami A, Moriyasu Y, Fukuda M, Uji Y, et al. 2025. The gain-of-function mutation in the rice auxin-signaling repressor OsIAA13 induces resistance to rice bacterial blight by activating jasmonic acid-mediated defense system. |
| [73] |
Zasloff M. 1992. Antibiotic peptides as mediators of innate immunity. |
| [74] |
Gong X, Shi W, Zhang Z, Luo M, Zhang B, et al. 2024. Exploring the effects of zeolite, biochar, and diatomite as additives for enhancing heavy metals passivation and eliminating antibiotic resistance genes in composts during vermicomposting of dewatered sludge and green waste. |
| [75] |
Hamidpour M, Akbari L, Shirani H. 2017. Effects of co-application of zeolites and vermicompost on speciation and phytoavailability of cadmium, lead, and zinc in a contaminated soil. |
| [76] |
Xiao Z, Han R, Su J, Zhu Z, Zhao Y, et al. 2023. Application of earthworm and silicon can alleviate antibiotic resistance in soil-Chinese cabbage system with ARGs contamination. |
| [77] |
Zhang J, Chen M, Sui Q, Tong J, Jiang C, et al. 2016. Impacts of addition of natural zeolite or a nitrification inhibitor on antibiotic resistance genes during sludge composting. |
| [78] |
Sanchez-Hernandez JC, Cares XA, Pérez MA, del Pino JN. 2019. Biochar increases pesticide-detoxifying carboxylesterases along earthworm burrows. |
| [79] |
Edwards CA, Arancon NQ. 2022. Interactions between earthworms, microorganisms, and other invertebrates. In Biology and Ecology of Earthworms. New York, NY: Springer. pp. 275–301 doi: 10.1007/978-0-387-74943-3_9 |
| [80] |
Huang K, Xia H. 2018. Role of earthworms' mucus in vermicomposting system: biodegradation tests based on humification and microbial activity. |
| [81] |
Lin L, Luo J, Li Z, Guo H, Liu T, et al. 2025. Mechanism of earthworm coelomic fluid inhibits multidrug-resistant bacteria and blocks resistance transmission. |