doi:10.48130/vegres-0026-0024

[1]

Wang N, Zhou X, Zhang T, Jian W, Sun Z, et al. 2025. Capsaicin from chili peppers and its analogues and their valued applications: an updated literature review. Food Research International 208:116034

doi: 10.1016/j.foodres.2025.116034

[2]

Noman A, Hussain A, Adnan M, Khan MI, Ashraf MF, et al. 2019. A novel MYB transcription factor CaPHL8 provide clues about evolution of pepper immunity againstsoil borne pathogen. Microbial Pathogenesis 137:103758

doi: 10.1016/j.micpath.2019.103758

[3]

Barik S, Kumar Sharma S, Naresh P, Kumar Karna A, Ganesan S, et al. 2024. A critical insight into the breeding for resistance to bacterial diseases in pepper (Capsicum spp.). Journal of Crop Health 76(5):957−979

doi: 10.1007/s10343-024-01023-6

[4]

Jiang G, Wei Z, Xu J, Chen H, Zhang Y, et al. 2017. Bacterial wilt in China: history, current status, and future perspectives. Frontiers in Plant Science 8:1549

doi: 10.3389/fpls.2017.01549

[5]

Kim BS, French E, Caldwell D, Harrington EJ, Iyer-Pascuzzi AS. 2016. Bacterial wilt disease: host resistance and pathogen virulence mechanisms. Physiological and Molecular Plant Pathology 95:37−43

doi: 10.1016/j.pmpp.2016.02.007

[6]

Raymaekers K, Ponet L, Holtappels D, Berckmans B, Cammue BPA. 2020. Screening for novel biocontrol agents applicable in plant disease management—a review. Biological Control 144:104240

doi: 10.1016/j.biocontrol.2020.104240

[7]

Du W, Yu Z, Miao X, Teng Z, Zhang C, et al. 2025. Unveiling the role of the TIR1/AFB gene family in Capsicum annuum: genome-wide identification, characterization, and transcriptomic analysis under Ralstonia solanacearum infection. Vegetable Research 5:e034

doi: 10.48130/vegres-0025-0028

[8]

Qiao Y, Wang Z, Sun H, Guo H, Song Y, et al. 2024. Synthetic community derived from grafted watermelon rhizosphere provides protection for ungrafted watermelon against Fusarium oxysporum via microbial synergistic effects. Microbiome 12(1):101

doi: 10.1186/s40168-024-01814-z

[9]

Snelders NC, Rovenich H, Petti GC, Rocafort M, van den Berg GC, et al. 2020. Microbiome manipulation by a soil-borne fungal plant pathogen using effector proteins. Nature Plants 6(11):1365−1374

doi: 10.1038/s41477-020-00799-5

[10]

Trivedi P, Leach JE, Tringe SG, Sa T, Singh BK. 2020. Plant–microbiome interactions: from community assembly to plant health. Nature Reviews Microbiology 18(11):607−621

doi: 10.1038/s41579-020-0412-1

[11]

Ping X, Khan RAA, Chen S, Jiao Y, Zhuang X, et al. 2024. Deciphering the role of rhizosphere microbiota in modulating disease resistance in cabbage varieties. Microbiome 12(1):160

doi: 10.1186/s40168-024-01883-0

[12]

Zhang J, Liu W, Bu J, Lin Y, Bai Y. 2023. Host genetics regulate the plant microbiome. Current Opinion in Microbiology 72:102268

doi: 10.1016/j.mib.2023.102268

[13]

Harbort CJ, Hashimoto M, Inoue H, Niu Y, Guan R, et al. 2020. Root-secreted coumarins and the microbiota interact to improve iron nutrition in Arabidopsis. Cell Host & Microbe 28(6):825−837.E6

doi: 10.1016/j.chom.2020.09.006

[14]

Tzipilevich E, Russ D, Dangl JL, Benfey PN. 2021. Plant immune system activation is necessary for efficient root colonization by auxin-secreting beneficial bacteria. Cell Host & Microbe 29:1507−1520.E4

doi: 10.1016/j.chom.2021.09.005

[15]

Ahmed W, Yang J, Tan Y, Munir S, Liu Q, et al. 2022. Ralstonia solanacearum, a deadly pathogen: revisiting the bacterial wilt biocontrol practices in tobacco and other Solanaceae. Rhizosphere 21:100479

doi: 10.1016/j.rhisph.2022.100479

[16]

Wang S, Wang Y, Yao Y, Li W, Hu Z, et al. 2025. Integrated management of bacterial wilt and root-knot nematode diseases in pepper: discovery of phenazine-1-carboxamide from Pseudomonas aeruginosa W-126. International Journal of Molecular Sciences 26(7):3335

doi: 10.3390/ijms26073335

[17]

Milovanović TP, Jelušić A, Iličić R, Trkulja N, Damnjanović J, et al. 2025. Biocontrol potential of indigenous pepper seed Bacillus strains against Xanthomonas euvesicatoria. Pest Management Science 81(8):4875−4885

doi: 10.1002/ps.8843

[18]

Kenfaoui J, Dutilloy E, Benchlih S, Lahlali R, Ait-Barka E, et al. 2024. Bacillus velezensis: a versatile ally in the battle against phytopathogens—insights and prospects. Applied Microbiology and Biotechnology 108(1):439

doi: 10.1007/s00253-024-13255-7

[19]

Zhang Y, Zhang Y, Li M, Zhang Y, Li X, et al. 2026. Antagonistic bacterium BY-S1 induces resistance to tobacco black shank: integrated insights from defense response and metabolic profiling. Pesticide Biochemistry and Physiology 218:106967

doi: 10.1016/j.pestbp.2026.106967

[20]

Luo Y, Li J, Kong X, Yao J, Sun Y, et al. 2025. Identification and characterization of Streptomyces sp. strain NEAU-174 with biocontrol ability against tomato bacterial wilt. Physiological and Molecular Plant Pathology 141:102985

doi: 10.1016/j.pmpp.2025.102985

[21]

Wang Y, Wang X, Sun S, Jin C, Su J, et al. 2022. GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet. Nature Communications 13:5913

doi: 10.1038/s41467-022-33238-4

[22]

Du W, Cheng F, Guo W, Dong R, Li H, et al. 2025. CaLhcb1-like coordinates ROS dynamics and lignin accumulation to gate Ralstonia solanacearum resistance in pepper (Capsicum annuum). Plant Physiology and Biochemistry 230:110938

doi: 10.1016/j.plaphy.2025.110938

[23]

Lee JH, Siddique MI, Jang S, Kim GW, Choi GJ, et al. 2024. Identification of QTLs associated with resistance to bacterial wilt in pepper (Capsicum annuum L.) through bi-parental QTL mapping and genome-wide association analysis. Scientia Horticulturae 329:112987

doi: 10.1016/j.scienta.2024.112987

[24]

Cao Y, Li Z, Du P, Ji J, Sun W, et al. 2024. Effects of different dwarfing interstocks on the rhizosphere, endophytic bacteria, and drought resistance of apple trees. Microbiological Research 283:127690

doi: 10.1016/j.micres.2024.127690

[25]

Liu G, Li T, Zhu X, Zhang X, Wang J. 2023. An independent evaluation in a CRC patient cohort of microbiome 16S rRNA sequence analysis methods: OTU clustering, DADA2, and Deblur. Frontiers in Microbiology 14:1178744

doi: 10.3389/fmicb.2023.1178744

[26]

Estaki M, Jiang L, Bokulich NA, McDonald D, González A, et al. 2020. QIIME 2 enables comprehensive end-to-end analysis of diverse microbiome data and comparative studies with publicly available data. Current Protocols in Bioinformatics 70(1):e100

doi: 10.1002/cpbi.100

[27]

Zhang P, Zhu Y, Ma D, Xu W, Zhou J, et al. 2019. Screening, identification, and optimization of fermentation conditions of an antagonistic endophyte to wheat head blight. Agronomy 9(9):476

doi: 10.3390/agronomy9090476

[28]

Cheng F, Zhou T, Du W, Xiao Y, Li Y, et al. 2025. Verticillium wilt resistance screening and early disease detection in eggplant using leaf injection inoculation and chlorophyll fluorescence. Scientia Horticulturae 349:114257

doi: 10.1016/j.scienta.2025.114257

[29]

Cheng F, Luo S, Li H, Tang Y, Li Y, et al. 2026. Glycoside hydrolase CaGH17-12 contributes to phytophthora blight resistance by activating the production of reactive oxygen species and jasmonic acid signalling in pepper. Molecular Plant Pathology 27(2):e70212

doi: 10.1111/mpp.70212

[30]

Wan Y, Ma Z, Lang J, Xu X, Shao C, et al. 2025. Host genotype-driven assembly of bacterial communities in the rice root microdomains. Soil Ecology Letters 7:250330

doi: 10.1007/s42832-025-0330-2

[31]

Xu S, Qiu Q, Yan C, Xiong J. 2024. Structure, acquisition, assembly, and function of the root-associated microbiomes in Japonica rice and hybrid rice. Agriculture, Ecosystems & Environment 373:109122

doi: 10.1016/j.agee.2024.109122

[32]

Compant S, Clément C, Sessitsch A. 2010. Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization. Soil Biology and Biochemistry 42(5):669−678

doi: 10.1016/j.soilbio.2009.11.024

[33]

Cao Y, Du P, Zhang J, Ji J, Xu J, et al. 2023. Dopamine alleviates cadmium stress in apple trees by recruiting beneficial microorganisms to enhance the physiological resilience revealed by high-throughput sequencing and soil metabolomics. Horticulture Research 10(7):uhad112

doi: 10.1093/hr/uhad112

[34]

Wang N, Shi Y, Zhu Y, Liu Y, Zhang Y, et al. 2026. Long-term compost fertilization enhanced soil disease suppressiveness by fostering interactions between root exudates and the rhizosphere microbiome. Microbiological Research 302:128327

doi: 10.1016/j.micres.2025.128327

[35]

Du XQ, Sun TX, Xu WL, Zhu T, Wang Q, et al. 2025. Multi-omics analysis reveals the specific role of biocontrol reagents against tomato bacterial wilt. Frontiers in Plant Science 16:1620460

doi: 10.3389/fpls.2025.1620460

[36]

Li D, Rothballer M, Schmid M, Esperschütz J, Hartmann A. 2011. Acidovorax radicis sp. nov., a wheat-root-colonizing bacterium. International Journal of Systematic and Evolutionary Microbiology 61(11):2589−2594

doi: 10.1099/ijs.0.025296-0

[37]

Xie J, Singh P, Qi Y, Singh RK, Qin Q, et al. 2023. Pseudomonas aeruginosa strain 91: a multifaceted biocontrol agent against banana Fusarium wilt. Journal of Fungi 9(11):1047

doi: 10.3390/jof9111047

[38]

Chin-A-Woeng TFC, Bloemberg GV, Lugtenberg BJJ. 2003. Phenazines and their role in biocontrol by Pseudomonas bacteria. New Phytologist 157(3):503−523

doi: 10.1046/j.1469-8137.2003.00686.x

[39]

Simionato AS, Navarro MO, de Jesus ML, Barazetti AR, da Silva CS, et al. 2017. The effect of phenazine-1-carboxylic acid on mycelial growth of Botrytis cinerea produced by Pseudomonas aeruginosa LV strain. Frontiers in Microbiology 8:1102

doi: 10.3389/fmicb.2017.01102

[40]

Hardoim PR, van Overbeek LS, van Elsas JD. 2008. Properties of bacterial endophytes and their proposed role in plant growth. Trends in Microbiology 16(10):463−471

doi: 10.1016/j.tim.2008.07.008

[41]

Chanway CP, Shishido M, Nairn J, Jungwirth S, Markham J, et al. 2000. Endophytic colonization and field responses of hybrid spruce seedlings after inoculation with plant growth-promoting rhizobacteria. Forest Ecology and Management 133(1–2):81−88

doi: 10.1016/S0378-1127(99)00300-X

[42]

Ghadamgahi F, Tarighi S, Taheri P, Saripella GV, Anzalone A, et al. 2022. Plant growth-promoting activity of Pseudomonas aeruginosa FG106 and its ability to act as a biocontrol agent against potato, tomato and taro pathogens. Biology 11(1):140

doi: 10.3390/biology11010140

[43]

Wang X, Zhou X, Cai Z, Guo L, Chen X, et al. 2020. A biocontrol strain of Pseudomonas aeruginosa CQ-40 promote growth and control Botrytis cinerea in tomato. Pathogens 10(1):22

doi: 10.3390/pathogens10010022

[44]

Din KU, Naeem MS, Ahmad F, Hussain S. 2026. Green synthesized zinc oxide nanoparticles enhance maize tolerance against drought stress by improving plant water balance, antioxidant defense, and osmotic adjustment. Plant Nano Biology 16:100275

doi: 10.1016/j.plana.2026.100275

[45]

Bender KW, Snedden WA. 2013. Calmodulin-related proteins step out from the shadow of their namesake. Plant Physiology 163(2):486−495

doi: 10.1104/pp.113.221069

[46]

Saand MA, Xu YP, Li W, Wang JP, Cai XZ. 2015. Cyclic nucleotide gated channel gene family in tomato: genome-wide identification and functional analyses in disease resistance. Frontiers in Plant Science 6:303

doi: 10.3389/fpls.2015.00303

[47]

Wang D, Wei L, Liu T, Ma J, Huang K, et al. 2023. Suppression of ETI by PTI priming to balance plant growth and defense through an MPK3/MPK6-WRKYs-PP2Cs module. Molecular Plant 16(5):903−918

doi: 10.1016/j.molp.2023.04.004

[48]

Zhou J, Wang J, Zheng Z, Fan B, Yu JQ, et al. 2015. Characterization of the promoter and extended C-terminal domain of Arabidopsis WRKY33 and functional analysis of tomato WRKY33 homologues in plant stress responses. Journal of Experimental Botany 66(15):4567−4583

doi: 10.1093/jxb/erv221