| [1] |
Henriksson PJG, Rico A, Troell M, Klinger DH, Buschmann AH, et al. 2018. Unpacking factors influencing antimicrobial use in global aquaculture and their implication for management: a review from a systems perspective. |
| [2] |
Kim JS, Harikrishnan R, Kim MC, Jang IS, Kim DH, et al. 2011. Enhancement of Eriobotrya japonica extracts on non-specific immune response and disease resistance in kelp grouper Epinephelus bruneus against Vibrio carchariae. |
| [3] |
Das R, Raman RP, Saha H, Singh R. 2015. Effect of Ocimum sanctum Linn. (Tulsi) extract on the immunity and survival of Labeo rohita (Hamilton) infected with Aeromonas hydrophila. |
| [4] |
Hosseini Shekarabi SP, Mostafavi ZS, Mehrgan MS, Islami HR. 2021. Dietary supplementation with dandelion (Taraxacum officinale) flower extract provides immunostimulation and resistance against Streptococcus iniae infection in rainbow trout (Oncorhynchus mykiss). |
| [5] |
Zheng ZL, Tan JYW, Liu HY, Zhou XH, Xiang X, et al. 2009. Evaluation of oregano essential oil (Origanum heracleoticum L.) on growth, antioxidant effect and resistance against Aeromonas hydrophila in channel catfish (Ictalurus punctatus). |
| [6] |
Abd El-Hamid MI, Ibrahim SM, Eldemery F, El-Mandrawy SAM, Metwally AS, et al. 2021. Dietary cinnamaldehyde nanoemulsion boosts growth and transcriptomes of antioxidant and immune-related genes to fight Streptococcus agalactiae infection in Nile tilapia (Oreochromis niloticus). |
| [7] |
Krishnan K, Khanna VG, Hameed S. 2010. Antiviral activity of Dasyscyphin C extracted from Eclipta prostrata against fish nodavirus. |
| [8] |
Sztiller-Sikorska M, Czyz M. 2020. Parthenolide as cooperating agent for anti-cancer treatment of various malignancies. |
| [9] |
Liu Q, Zhao J, Tan R, Zhou H, Lin Z, et al. 2015. Parthenolide inhibits pro-inflammatory cytokine production and exhibits protective effects on progression of collagen-induced arthritis in a rat model. |
| [10] |
Xu S, Zhao X, Liu F, Cao Y, Wang B, et al. 2018. Crucial role of oxidative stress in bactericidal effect of parthenolide against Xanthomonas oryzae pv. oryzae. |
| [11] |
Luan Y, Li M, Zhou W, Yao Y, Yang Y, et al. 2023. The fish microbiota: research progress and potential applications. |
| [12] |
Medina-Félix D, Garibay-Valdez E, Vargas-Albores F, Martínez-Porchas M. 2023. Fish disease and intestinal microbiota: a close and indivisible relationship. |
| [13] |
Liu YJ, Tang B, Wang FC, Tang L, Lei YY, et al. 2020. Parthenolide ameliorates colon inflammation through regulating Treg/Th17 balance in a gut microbiota-dependent manner. |
| [14] |
Han Z, Sun J, Jiang B, Chen K, Ge L, et al. 2024. Fecal microbiota transplantation accelerates restoration of florfenicol-disturbed intestinal microbiota in a fish model. |
| [15] |
Han Z, Sun J, Jiang B, Hu X, Lv A, et al. 2021. Concurrent infections of Aeromonas veronii and Vibrio cholerae in koi carp (Cyprinus carpio var. koi). |
| [16] |
Wang B, Mao C, Feng J, Li Y, Hu J, et al. 2020. A first report of Aeromonas veronii infection of the sea bass, Lateolabrax maculatus in China. |
| [17] |
Liu G, Li J, Jiang Z, Zhu X, Gao X, et al. 2022. Pathogenicity of Aeromonas veronii causing mass mortalities of Odontobutis potamophila and its induced host immune response. |
| [18] |
Agbo MC, Ezeonu IM, Onodagu BO, Ezeh CC, Ozioko CA, et al. 2024. Antimicrobial resistance markers distribution in Staphylococcus aureus from Nsukka, Nigeria. |
| [19] |
Magoč T, Salzberg SL. 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. |
| [20] |
Edgar RC. 2013. UPARSE: highly accurate OTU sequences from microbial amplicon reads. |
| [21] |
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, et al. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. |
| [22] |
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, et al. 2010. QIIME allows analysis of high-throughput community sequencing data. |
| [23] |
Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, et al. 2011. Metagenomic biomarker discovery and explanation. |
| [24] |
Langille MGI, Zaneveld J, Caporaso JG, McDonald D, Knights D, et al. 2013. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. |
| [25] |
Kanehisa M, Goto S. 2000. KEGG: Kyoto Encyclopedia of Genes and Genomes. |
| [26] |
Osman W, Ibrahim M, Adam M, Mothana R, Mohammed M, et al. 2019. Isolation and characterization of four terpenoidal compounds with potential antimicrobial activity from Tarchonanthus camphoratus L. (Asteraceae). |
| [27] |
Romero D, Sanabria-Valentín E, Vlamakis H, Kolter R. 2013. Biofilm inhibitors that target amyloid proteins. |
| [28] |
Freund RRA, Gobrecht P, Fischer D, Arndt HD. 2020. Advances in chemistry and bioactivity of parthenolide. |
| [29] |
Yan L, Wang P, Zhao C, Fan S, Lin H, et al. 2021. Toxic responses of liver in Lateolabrax maculatus during hypoxia and re-oxygenation. |
| [30] |
Ahrodia T, Das S, Bakshi S, Das B. 2022. Structure, functions, and diversity of the healthy human microbiome. |
| [31] |
Xavier R, Severino R, Silva SM. 2024. Signatures of dysbiosis in fish microbiomes in the context of aquaculture. |
| [32] |
Tsuchiya C, Sakata T, Sugita H. 2008. Novel ecological niche of Cetobacterium somerae, an anaerobic bacterium in the intestinal tracts of freshwater fish. |
| [33] |
Zhou W, Xie M, Xie Y, Liang H, Li M, et al. 2022. Effect of dietary supplementation of Cetobacterium somerae XMX-1 fermentation product on gut and liver health and resistance against bacterial infection of the genetically improved farmed tilapia (GIFT, Oreochromis niloticus). |
| [34] |
Qi X, Zhang Y, Zhang Y, Luo F, Song K, et al. 2023. Vitamin B12 produced by Cetobacterium somerae improves host resistance against pathogen infection through strengthening the interactions within gut microbiota. |
| [35] |
Cao H, Zhang S, An J, Diao J, Xu L, et al. 2022. Rhodobacter azotoformans supplementation improves defense ability of Chinese mitten crab Eriocheir sinensis against citrobacteriosis. |
| [36] |
Song Z, Li K, Li K. 2024. Acute effects of the environmental probiotics Rhodobacter sphaeroides on intestinal bacteria and transcriptome in shrimp Penaeus vannamei. |
| [37] |
Yuan C, Ma Z, Liu S, Nie H, Feng G, et al. 2025. Effects of strip-tillage on soil microbial community structure and function in black soil. |
| [38] |
Kuo SF, Lee CH. 2018. An oil refinery worker at Kaohsiung, with Pseudoxanthomonas kaohsiungensis bloodstream infection presenting as chronic pericarditis and masquerading as tuberculosis pericarditis. |
| [39] |
Karcher N, Nigro E, Punčochář M, Blanco-Míguez A, Ciciani M, et al. 2021. Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly. |
| [40] |
Zhang FL, Yang YL, Zhang Z, Yao YY, Xia R, et al. 2021. Surface-displayed Amuc_1100 from Akkermansia muciniphila on Lactococcus lactis ZHY1 improves hepatic steatosis and intestinal health in high-fat-fed zebrafish. |
| [41] |
Rodrigues VF, Elias-Oliveira J, Pereira ÍS, Pereira JA, Barbosa SC, et al. 2022. Akkermansia muciniphila and gut immune system: a good friendship that attenuates inflammatory bowel disease, obesity, and diabetes. |
| [42] |
Chang X, Li H, Feng J, Chen Y, Nie G, et al. 2019. Effects of cadmium exposure on the composition and diversity of the intestinal microbial community of common carp (Cyprinus carpio L.). |
| [43] |
Chang X, Wang X, Feng J, Su X, Liang J, et al. 2020. Impact of chronic exposure to trichlorfon on intestinal barrier, oxidative stress, inflammatory response and intestinal microbiome in common carp (Cyprinus carpio L.). |
| [44] |
Hieu DQ, Hang BTB, Lokesh J, Garigliany MM, Huong DTT, et al. 2022. Salinity significantly affects intestinal microbiota and gene expression in striped catfish juveniles. |
| [45] |
Fu PP, Xiong F, Feng WW, Zou H, Wu SG, et al. 2019. Effect of intestinal tapeworms on the gut microbiota of the common carp, Cyprinus carpio. |
| [46] |
Yan X, Huang W, Suo X, Pan S, Li T, et al. 2023. Integrated analysis of microbiome and host transcriptome reveals the damage/protective mechanism of corn oil and olive oil on the gut health of grouper (♀ Epinephelus fuscoguttatus × ♂ E. lanceolatus). |
| [47] |
Li S, Heng X, Guo L, Lessing DJ, Chu W. 2022. SCFAs improve disease resistance via modulate gut microbiota, enhance immune response and increase antioxidative capacity in the host. |
| [48] |
Wei J, Guo X, Liu H, Chen Y, Wang W. 2018. The variation profile of intestinal microbiota in blunt snout bream (Megalobrama amblycephala) during feeding habit transition. |
| [49] |
Huang AG, Su LJ, He WH, Zhang FL, Wei CS, et al. 2022. Natural component plumbagin as a potential antibacterial agent against Streptococcus agalactiae infection. |
| [50] |
Huang AG, He WH, Zhang FL, Wei CS, Wang YH. 2022. Natural component geniposide enhances survival rate of crayfish Procambarus clarkii infected with white spot syndrome virus. |